YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|120538198, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.47
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEPKASDTTA GASYVESSKS KRRNSKEIKQ STVALSQQIR TMKRLFGFEQ EDVSSWDRFV  60
   61 CLLNRPTDPA SLGIFRFLFG MLMALDITQE RGLSHLDYKY LDGAPVCRFP LFNFLKPLPM 120
  121 DWMFFVYFVM FLGAVGIMLG CFYRIACLMF ISTYWYIFFL DKTTWNNHSY LYGLIGFQLT 180
  181 PMDANRYWSV DGLRNPRKRN AHVPLWNYTL LRTQIFIVYF IAGVKKLDAD WVEGYSMKYL 240
  241 AHHWLFDPFK VILPVEVVSL TVVHGGGLIL DLTAGYLLFF DVTRPVAIFF VSYFHCMNSQ 300
  301 LFSIGMFSYT MLSTSPLFCY PDWPRRFFGH FPEFLQPHSW RTTSI

Type	Start	End	Confidence
Cytoplasmic	1	71	0.92
Transmembrane Helix	72	88	0.47
Non-Cytoplasmic	89	122	0.49
Transmembrane Helix	123	147	0.89
Cytoplasmic	148	207	0.57
Transmembrane Helix	208	224	0.56
Non-Cytoplasmic	225	251	0.54
Transmembrane Helix	252	280	0.67
Cytoplasmic	281	285	0.37
Transmembrane Helix	286	320	0.61
Non-Cytoplasmic	321	345	0.47