YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	HM13_MOUSE
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDSAVSDPHN GSAEAGTPAN GTTRPPSTPE GIALAYGSLL LMALLPIFFG ALRSVRCARG  60
   61 KSSSDMPETI TSRDAARFPI IASCTLLGLY LFFKIFSQEY INLLLSMYFF VLGILALSHT 120
  121 ISPFMNKFFP ANFPNRQYQL LFTQGSGENK EEIINYEFDT KDLVCLGLSS VVGVWYLLRK 180
  181 HWIANNLFGL AFSLNGVELL HLNNVSTGCI LLGGLFIYDI FWVFGTNVMV TVAKSFEAPI 240
  241 KLVFPQDLLE KGLEADNFAM LGLGDIVIPG IFIALLLRFD ISLKKNTHTY FYTSFAAYIF 300
  301 GLGLTIFIMH IFKHAQPALL YLVPACIGFP VLVALAKGEV AEMFSYEESN PKDPAAETES 360
  361 KEESTEASAS KRLEKKEK

Type	Start	End	Confidence
Non-Cytoplasmic	1	31	0.80
Transmembrane Helix	32	55	0.89
Cytoplasmic	56	74	0.78
Transmembrane Helix	75	96	0.84
Non-Cytoplasmic	97	102	0.59
Transmembrane Helix	103	123	0.90
Cytoplasmic	124	199	0.73
Transmembrane Helix	200	222	0.82
Non-Cytoplasmic	223	257	0.85
Transmembrane Helix	258	279	0.90
Cytoplasmic	280	288	0.81
Transmembrane Helix	289	311	0.92
Non-Cytoplasmic	312	317	0.76
Transmembrane Helix	318	336	0.94
Cytoplasmic	337	378	0.89