YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|113203663
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.98
Topology Confidence:	0.60
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGVLCFLASF WLALVGGAIA DNAERYSANL SSHVEDFTPF PGTEFDFLGT TLRPPNLALP  60
   61 SNGSMHGYCP QQTKITTAFK YINTVISCTI FIVGMVGNAT LLRIIYQNKC MRNGPNALIA 120
  121 SLALGDLIYV VIDLPINVFK LLAGRWPFDH NDFGVFLCKL FPFLQKSSVG ITVLNLCALS 180
  181 VDRYRAVASW SRVQGIGIPL ITAIEIVSIW ILSFILAIPE AIGFVMVPFE YKGEQHRTCM 240
  241 LNATTKFMEP VPRPFPVSS

Type	Start	End	Confidence
Signal Peptide	1	20	0.99
N-region	1	11
H-region	12	17
C-region	18	20
Cleavage Site	20	21
Non-Cytoplasmic	21	80	0.99
Transmembrane Helix	81	102	0.86
Cytoplasmic	103	116	0.73
Transmembrane Helix	117	136	0.79
Non-Cytoplasmic	137	162	0.77
Transmembrane Helix	163	181	0.60
Cytoplasmic	182	195	0.61
Transmembrane Helix	196	218	0.85
Non-Cytoplasmic	219	259	0.70