YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|111559389
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.75
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	20	0.99
N-region	1	11
H-region	12	17
C-region	18	20
Cleavage Site	20	21
Non-Cytoplasmic	21	80	0.99
Transmembrane Helix	81	102	0.89
Cytoplasmic	103	116	0.76
Transmembrane Helix	117	136	0.81
Non-Cytoplasmic	137	161	0.75
Transmembrane Helix	162	181	0.80
Cytoplasmic	182	195	0.84
Transmembrane Helix	196	218	0.91
Non-Cytoplasmic	219	258	0.94
Transmembrane Helix	259	283	0.87
Cytoplasmic	284	303	0.97
Transmembrane Helix	304	323	0.94
Non-Cytoplasmic	324	352	0.90
Transmembrane Helix	353	372	0.75
Cytoplasmic	373	399	0.78

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGVLCFLASF WLALVGGAIA DNAERYSANL SSHVEDFTPF PGTEFDFLGT TLRPPNLALP  60
   61 SNGSMHGYCP QQTKITTAFK YINTVISCTI FIVGMVGNAT LLRIIYQNKC MRNGPNALIA 120
  121 SLALGDLIYV VIDLPINVFK LLAGRWPFDH NDFGVFLCKL FPFLQKSSVG ITVLNLCALS 180
  181 VDRYRAVASW SRVQGIGIPL ITAIEIVSIW ILSFILAIPE AIGFVMVPFE YKGEQHRTCM 240
  241 LNATTKFMEF YQDVKDWWLF GFYFCMPLVC TAIFYTLMTC EMLNRRNGSL RIALSEHLKQ 300
  301 RREVAKTVFC LVVIFALCWF PLHLSRILKK TVYDEMDKNR CELLSFLLLM DYIGINLATM 360
  361 NSCINPIALY FVSKKFKNCF QALLWSFIKR CQQHPQLGL