YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|56418389
Protein type:	Transmembrane
Type Confidence:	0.85
Topology Confidence:	0.66
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVFQIIILVI CTICMKHYAK GEFQQSLAIT DILPEDIKRY DKMRPPKKEG QPTIVYFHVT  60
   61 VMGLDSIDEN SMTYVADVFF AQTWKNHRLR LPENMTQEYR LLEVDWLKNM WRPDSFFKNA 120
  121 KSVTFQTMTI PNHYMWLYKD KTILYMVKLT LKLSCIMNFA IYPHDTQECK LQMESLSHTT 180
  181 DDLIFQWDPT TPLVVDENIE LPQVALIRNE TADCTQVYST GNFTCLEVVF TLKRRLVYYV 240
  241 FNTYIPTCMI VIMSWVSFWI KPEAAPARVT LGVTSLLTLS TQHAKSQSSL PPVSYLKAVD 300
  301 AFMSVCTVFV FMALMEYCLI NIVLSDTPIP KPMAYPPKPV AGDGPKKEGE GAPPGGSNST 360
  361 ASKQQATMLP LADEKIEKIE KIFDEMTKNR RIVTTTRRVV RPPLDADGPW IPRQESRIIL 420
  421 TPTIAPPPPP PQPAAPEPEL PKPKLTPAQE RLKRAIYIDR SSRVLFPALF ASLNGIYWCV 480
  481 FYEYL

Type	Start	End	Confidence
Cytoplasmic	1	235	0.66
Transmembrane Helix	236	259	0.84
Non-Cytoplasmic	260	300	0.69
Transmembrane Helix	301	323	0.81
Cytoplasmic	324	460	0.92
Transmembrane Helix	461	481	0.81
Non-Cytoplasmic	482	485	0.79