YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	VPP1_MOUSE
Protein type:	Transmembrane
Type Confidence:	0.85
Topology Confidence:	0.70
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	407	0.97
Transmembrane Helix	408	432	0.89
Cytoplasmic	433	450	0.92
Transmembrane Helix	451	470	0.94
Non-Cytoplasmic	471	511	0.87
Transmembrane Helix	512	532	0.76
Cytoplasmic	533	546	0.82
Transmembrane Helix	547	569	0.90
Non-Cytoplasmic	570	577	0.82
Transmembrane Helix	578	600	0.89
Cytoplasmic	601	612	0.74
Transmembrane Helix	613	632	0.80
Non-Cytoplasmic	633	642	0.76
Transmembrane Helix	643	666	0.88
Cytoplasmic	667	743	0.96
Transmembrane Helix	744	766	0.70
Non-Cytoplasmic	767	774	0.62
Transmembrane Helix	775	798	0.86
Cytoplasmic	799	839	0.82

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGELFRSEEM TLAQLFLQSE AAYCCVSELG ELGKVQFRDL NPDVNVFQRK FVNEVRRCEE  60
   61 MDRKLRFVEK EIRKANIPIM DTGENPEVPF PRDMIDLEAN FEKIENELKE INTNQEALKR 120
  121 NFLELTELKF ILRKTQQFFD EAELHHQQMA DPDLLEESSS LLEPNEMGRG APLRLGFVAG 180
  181 VINRERIPTF ERMFWRVCRG NVFLRQAEIE NPLEDPVTGD YVHKSVFIIF FQGDQLKNRV 240
  241 KKICEGFRAS LYPCPETPQE RKEMASGVNT RIDDLQMVLN QTEDHRQRVL QAAAKNIRVW 300
  301 FIKVRKMKAI YHTLNLCNID VTQKCLIAEV WCPVTDLDSI QFALRRGTEH SGSTVPSILN 360
  361 RMQTNQTPPT YNKTNKFTHG FQNIVDAYGI GTYREINPAP YTVITFPFLF AVMFGDFGHG 420
  421 ILMTLFAVWM VLRESRILSQ KHENEMFSMV FSGRYIILLM GLFSIYTGLI YNDCFSKSLN 480
  481 IFGSSWSVRP MFTQGNWTEE TLLGSSVLQL NPAIPGVFGG PYPFGIDPIW NIATNKLTFL 540
  541 NSFKMKMSVI LGIIHMLFGV SLSLFNHIYF KKPLNIYFGF IPEIIFMSSL FGYLVILIFY 600
  601 KWTAYDAHSS RNAPSLLIHF INMFLFSYPE SGNAMLYSGQ KGIQCFLIVV AMLCVPWMLL 660
  661 FKPLILRHQY LRKKHLGTLN FGGIRVGNGP TEEDAEIIQH DQLSTHSEDA EEFDFGDTMV 720
  721 HQAIHTIEYC LGCISNTASY LRLWALSLAH AQLSEVLWTM VIHIGLHVRS LAGGLGLFFI 780
  781 FAAFATLTVA ILLIMEGLSA FLHALRLHWV EFQNKFYTGT GFKFLPFSFE HIREGKFDE