YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SERC1_MOUSE
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.65
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	6	0.72
Transmembrane Helix	7	29	0.69
Cytoplasmic	30	39	0.87
Transmembrane Helix	40	61	0.94
Non-Cytoplasmic	62	88	0.97
Transmembrane Helix	89	109	0.92
Cytoplasmic	110	124	0.86
Transmembrane Helix	125	143	0.97
Non-Cytoplasmic	144	150	0.80
Transmembrane Helix	151	174	0.90
Cytoplasmic	175	192	0.94
Transmembrane Helix	193	218	0.88
Non-Cytoplasmic	219	230	0.83
Transmembrane Helix	231	250	0.94
Cytoplasmic	251	311	0.64
Transmembrane Helix	312	333	0.89
Non-Cytoplasmic	334	386	0.67
Transmembrane Helix	387	408	0.87
Cytoplasmic	409	421	0.63
Transmembrane Helix	422	447	0.79
Non-Cytoplasmic	448	453	0.65

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGSVLGLCSV ASWIPCLCGS APCLLCRCCP SGNNSTVTRL IYALFLLVGV CVACVMLIPG  60
   61 MEEQLNKIPG FCENEKGVVP CNILVGYKAV YRLCFGLAMF YLLLSLLMIK VKSSSDPRAA 120
  121 VHNGFWFFKF ATAVAIIIGA FFIPEGTFTT VWFYVGMAGA FCFILIQLVL LIDFAHSWNE 180
  181 SWVEKMEEGN SRCWYAALLS ATALNYLLSL VAVVLFFVYY THPASCAENK AFISVNMLLC 240
  241 IGASVMSILP KIQESQPRSG LLQSSVITVY TMYLTWSAMT NEPETNCNPS LLSIIGFNTT 300
  301 RPIPKDGQSV QWWHPQGIIG LVLFLLCVFY SSIRTSNNSQ VNKLTLTSDE STLIEDGNGR 360
  361 SDGSLDDGDG IHRAVDNERD GVTYSYSFFH FMLFLASLYI MMTLTNWYRY EPSREMKSQW 420
  421 TAVWVKISSS WIGLVLYVWT LVAPLVLTNR DFD