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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: GPC1_MOUSE
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.76
Topology Confidence: 0.54
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MELRTRGWWL LCAAAALVVC ARGDPASKSR SCSEVRQIYG AKGFSLSDVP QAEISGEHLR  60
   61 ICPQGYTCCT SEMEENLANH SRMELESALH DSSRALQATL ATQLHGIDDH FQRLLNDSER 120
  121 TLQEAFPGAF GDLYTQNTRA FRDLYAELRL YYRGANLHLE ETLAEFWARL LERLFKQLHP 180
  181 QLLPDDYLDC LGKQAEALRP FGDAPRELRL RATRAFVAAR SFVQGLGVAS DVVRKVAQVP 240
  241 LAPECSRAIM KLVYCAHCRG VPGARPCPDY CRNVLKGCLA NQADLDAEWR NLLDSMVLIT 300
  301 DKFWGPSGAE SVIGGVHVWL AEAINALQDN KDTLTAKVIQ ACGNPKVNPH GSGPEEKRRR 360
  361 GKLALQEKPS TGTLEKLVSE AKAQLRDIQD FWISLPGTLC SEKMAMSPAS DDRCWNGISK 420
  421 GRYLPEVMGD GLANQINNPE VEVDITKPDM TIRQQIMQLK IMTNRLRGAY GGNDVDFQDA 480
  481 SDDGSGSGSG GGCPDDTCGR RVSKKSSSSR TPLTHALPGL SEQEGQKTSA ATCPEPHSFF 540
  541 LLFLVTLVLA AARPRWR

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle