YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	5H5A_MOUSE, 5HT5...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.49
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDLPVNLTSF SLSTPSSLEP NRSLDTEVLR PSRPFLSAFR VLVLTLLGFL AAATFTWNLL  60
   61 VLATILKVRT FHRVPHNLVA SMAISDVLVA VLVMPLSLVH ELSGRRWQLG RRLCQLWIAC 120
  121 DVLCCTASIW NVTAIALDRY WSITRHLEYT LRTRKRVSNV MILLTWALST VISLAPLLFG 180
  181 WGETYSEPSE ECQVSREPSY TVFSTVGAFY LPLWLVLFVY WKIYRAAKFR MGSRKTNSVS 240
  241 PVPEAVEVKN ATQHPQMVFT ARHATVTFQT EGDTWREQKE QRAALMVGIL IGVFVLCWFP 300
  301 FFVTELISPL CSWDVPAIWK SIFLWLGYSN SFFNPLIYTA FNRSYSSAFK VFFSKQQ

Type	Start	End	Confidence
Non-Cytoplasmic	1	37	0.51
Transmembrane Helix	38	66	0.77
Cytoplasmic	67	77	0.44
Transmembrane Helix	78	99	0.89
Non-Cytoplasmic	100	114	0.49
Transmembrane Helix	115	137	0.49
Cytoplasmic	138	159	0.91
Transmembrane Helix	160	180	0.93
Non-Cytoplasmic	181	201	0.93
Transmembrane Helix	202	224	0.88
Cytoplasmic	225	283	0.98
Transmembrane Helix	284	303	0.96
Non-Cytoplasmic	304	321	0.82
Transmembrane Helix	322	341	0.87
Cytoplasmic	342	357	0.89