YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	OPN4_MOUSE
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDSPSGPRVL SSLTQDPSFT TSPALQGIWN GTQNVSVRAQ LLSVSPTTSA HQAAAWVPFP  60
   61 TVDVPDHAHY TLGTVILLVG LTGMLGNLTV IYTFCRNRGL RTPANMFIIN LAVSDFLMSV 120
  121 TQAPVFFASS LYKKWLFGET GCEFYAFCGA VFGITSMITL TAIAMDRYLV ITRPLATIGR 180
  181 GSKRRTALVL LGVWLYALAW SLPPFFGWSA YVPEGLLTSC SWDYMTFTPQ VRAYTMLLFC 240
  241 FVFFLPLLII IFCYIFIFRA IRETGRACEG CGESPLRQRR QWQRLQSEWK MAKVALIVIL 300
  301 LFVLSWAPYS TVALVAFAGY SHILTPYMSS VPAVIAKASA IHNPIIYAIT HPKYRVAIAQ 360
  361 HLPCLGVLLG VSGQRSHPSL SYRSTHRSTL SSQSSDLSWI SGRKRQESLG SESEVGWTDT 420
  421 ETTAAWGAAQ QASGQSFCSQ NLEDGELKAS SSPQVQRSKT PKVPGPSTCR PMKGQGARPS 480
  481 SLRGDQKGRL AVCTGLSECP HPHTSQFPLA FLEDDVTLRH L

Type	Start	End	Confidence
Non-Cytoplasmic	1	69	0.56
Transmembrane Helix	70	94	0.86
Cytoplasmic	95	105	0.87
Transmembrane Helix	106	128	0.88
Non-Cytoplasmic	129	143	0.91
Transmembrane Helix	144	165	0.92
Cytoplasmic	166	185	0.89
Transmembrane Helix	186	207	0.90
Non-Cytoplasmic	208	233	0.92
Transmembrane Helix	234	257	0.95
Cytoplasmic	258	288	0.98
Transmembrane Helix	289	310	0.84
Non-Cytoplasmic	311	322	0.52
Transmembrane Helix	323	341	0.63
Cytoplasmic	342	356	0.56
Transmembrane Helix	357	373	0.62
Non-Cytoplasmic	374	521	0.62