YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SO1A1_MOUSE
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.65
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	20	0.89
Transmembrane Helix	21	40	0.84
Non-Cytoplasmic	41	56	0.73
Transmembrane Helix	57	79	0.89
Cytoplasmic	80	86	0.76
Transmembrane Helix	87	109	0.90
Non-Cytoplasmic	110	163	0.79
Transmembrane Helix	164	183	0.65
Cytoplasmic	184	200	0.75
Transmembrane Helix	201	222	0.79
Non-Cytoplasmic	223	242	0.94
Transmembrane Helix	243	266	0.93
Cytoplasmic	267	316	0.93
Transmembrane Helix	317	336	0.88
Non-Cytoplasmic	337	353	0.88
Transmembrane Helix	354	376	0.90
Cytoplasmic	377	387	0.86
Transmembrane Helix	388	409	0.87
Non-Cytoplasmic	410	517	0.91
Transmembrane Helix	518	536	0.93
Cytoplasmic	537	547	0.77
Transmembrane Helix	548	570	0.86
Non-Cytoplasmic	571	600	0.87
Transmembrane Helix	601	623	0.87
Cytoplasmic	624	670	0.89

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEETEKKVAT QEGRFFSKMK VFLMSLTCAY LAKSLSGVYM NSMLTQIERQ FGIPTSVVGF  60
   61 ITGSFEIGNL LLIVFVSYFG RKLHRPIIIG VGCVVMGLGC FLMASPHFLM GRYKYETTIS 120
  121 PTSNLSSNSF LCIENRTQTL KPTQDPTECV KEIKSLMWIY VLIGNTMRGI GETPIMPLGI 180
  181 SYIEDFAKSE NSPLYIGILE MGKIVGPIIG LLLGSFFARV YVDIGSVNTD DLTITPTDTR 240
  241 WVGAWWIGFL VCAGVNILTS IPFFFFPKTL PKKELQDNVD VTKYEKVEKH RERAKKENLG 300
  301 ITKDFLPFMK SLCCNPIYML FSLTSVLQIN GFASTFTFLP KYLEQQYGKS TSEAVFLIGV 360
  361 YSLPPVCLGY LISGFIMKKF KITVKKAAYI AFGLSLSEYF IFLCNYLLTC DNFPVAGLTT 420
  421 SYKGVQHPLY GEKNVLADCN TRCSCLTDTW DPVCGDNGLA YMSACLAGCE KSVGTGTNMV 480
  481 FQNCSCIGSS GNSSAVLGLC KKGPECDNKL QYFLIKSVFS SFIFSLAAIP GYMVLLRCVK 540
  541 SEEKSIGVGL HAFFIRLLAG IPAPVYFGAL IDRTCLHWGT LKCGQPGACR MYDINRFRHI 600
  601 YLGLPAAVRG SSFLPAVFIL ILMRKFHFPG DIHSPDTELA EMKLTEKESE CTDVCRSPKV 660
  661 ENDGELKTKL