YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	GIPR_MOUSE
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.71
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	20	0.97
N-region	1	11
H-region	12	17
C-region	18	20
Cleavage Site	20	21
Non-Cytoplasmic	21	134	0.99
Transmembrane Helix	135	158	0.90
Cytoplasmic	159	166	0.90
Transmembrane Helix	167	185	0.77
Non-Cytoplasmic	186	224	0.73
Transmembrane Helix	225	243	0.71
Cytoplasmic	244	253	0.79
Transmembrane Helix	254	273	0.96
Non-Cytoplasmic	274	293	0.90
Transmembrane Helix	294	316	0.90
Cytoplasmic	317	334	0.89
Transmembrane Helix	335	353	0.85
Non-Cytoplasmic	354	369	0.78
Transmembrane Helix	370	391	0.83
Cytoplasmic	392	460	0.87

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPLRLLLLLL WLWGLQWAET DSEGQTTTGE LYQRWEHYGQ ECQKMLETTE PPSGLACNGS  60
   61 FDMYACWNYT AANTTARVSC PWYLPWFRQV SAGFVFRQCG SDGQWGSWRD HTQCENPEKN 120
  121 GAFQDQTLIL ERLQIMYTVG YSLSLTTLLL ALLILSLFRR LHCTRNYIHM NLFTSFMLRA 180
  181 AAILTRDQLL PPLGPYTGDQ APTPWNQALA ACRTAQIMTQ YCVGANYTWL LVEGVYLHHL 240
  241 LVIVGRSEKG HFRCYLLLGW GAPALFVIPW VIVRYLRENT QCWERNEVKA IWWIIRTPIL 300
  301 ITILINFLIF IRILGILVSK LRTRQMRCPD YRLRLARSTL TLVPLLGVHE VVFAPVTEEQ 360
  361 VEGSLRFAKL AFEIFLSSFQ GFLVSVLYCF INKEVQSEIR QGWRHRRLRL SLQEQRPRPH 420
  421 QELAPRAVPL SSACREAAVG NALPSGMLHV PGDEVLESYC