YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	HACD1_MOUSE
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGKGDWRQGR VEMPCAHVSR LHKTCVQVRV RVTMASSEED GTNGASEASD EKEAAGKRRR  60
   61 LGLLATAWLT FYNIAMTAGW LVLAIAMVRF YMEKGTHRGL YKSIQKTLKF FQTFALLEVV 120
  121 HCLIGIVPTS VLVTGVQVSS RIFMVWLITH SIKPIQNEES VVLFLVSWTV TEITRYSFYT 180
  181 FSLLDHLPHF IKWARYNLFI ILYPVGVAGE LLTIYAALPY VKKSGMFSVR LPNKYNVSFD 240
  241 YYYFLLITMA SYIPLFPQLY FHMLRQRRKV LHGEVIAEKD D

Type	Start	End	Confidence
Cytoplasmic	1	63	0.91
Transmembrane Helix	64	87	0.86
Non-Cytoplasmic	88	116	0.84
Transmembrane Helix	117	138	0.85
Cytoplasmic	139	197	0.82
Transmembrane Helix	198	218	0.95
Non-Cytoplasmic	219	240	0.84
Transmembrane Helix	241	261	0.94
Cytoplasmic	262	281	0.86