YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	LAT2_MOUSE
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	38	0.98
Transmembrane Helix	39	60	0.92
Non-Cytoplasmic	61	70	0.83
Transmembrane Helix	71	93	0.89
Cytoplasmic	94	116	0.77
Transmembrane Helix	117	138	0.79
Non-Cytoplasmic	139	158	0.87
Transmembrane Helix	159	179	0.90
Cytoplasmic	180	188	0.84
Transmembrane Helix	189	209	0.90
Non-Cytoplasmic	210	229	0.89
Transmembrane Helix	230	251	0.91
Cytoplasmic	252	266	0.88
Transmembrane Helix	267	289	0.90
Non-Cytoplasmic	290	313	0.92
Transmembrane Helix	314	335	0.88
Cytoplasmic	336	360	0.81
Transmembrane Helix	361	380	0.92
Non-Cytoplasmic	381	388	0.68
Transmembrane Helix	389	408	0.93
Cytoplasmic	409	420	0.83
Transmembrane Helix	421	441	0.92
Non-Cytoplasmic	442	446	0.79
Transmembrane Helix	447	468	0.91
Cytoplasmic	469	531	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEKGARQRNN TAKNHPGSDT SPEAEASSGG GGVALKKEIG LVSACGIIVG NIIGSGIFVS  60
   61 PKGVLENAGS VGLALIVWIV TGIITAVGAL CYAELGVTIP KSGGDYSYVK DIFGGLAGFL 120
  121 RLWIAVLVIY PTNQAVIALT FSNYVLQPLF PTCFPPESGL RLLAAICLLL LTWVNCSSVR 180
  181 WATRVQDIFT AGKLLALALI IIMGIVQICK GEFFWLEPKN AFENFQEPDI GLVALAFLQG 240
  241 SFAYGGWNFL NYVTEELVDP YKNLPRAIFI SIPLVTFVYV FANIAYVTAM SPQELLASNA 300
  301 VAVTFGEKLL GVMAWIMPIS VALSTFGGVN GSLFTSSRLF FAGAREGHLP SVLAMIHVKR 360
  361 CTPIPALLFT CLSTLLMLVT SDMYTLINYV GFINYLFYGV TVAGQIVLRW KKPDIPRPIK 420
  421 VSLLFPIIYL LFWAFLLIFS LWSEPVVCGI GLAIMLTGVP VYFLGVYWQH KPKCFNDFIK 480
  481 SLTLVSQKMC VVVYPQEGNS GAEETTDDLE EQHKPIFKPT PVKDPDSEEQ P