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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: NCAN_MOUSE
Protein type: Globular with Signal Peptide
Type Confidence: 0.99
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGAGSVWASG LLLLWLLLLV AGDQDTQDTT ATEKGLRMLK SGSGPVRAAL AELVALPCFF  60
   61 TLQPRLSSLR DIPRIKWTKV QTASGQRQDL PILVAKDNVV RVAKGWQGRV SLPAYPRHRA 120
  121 NATLLLGPLR ASDSGLYRCQ VVKGIEDEQD LVTLEVTGVV FHYRAARDRY ALTFAEAQEA 180
  181 CRLSSATIAA PRHLQAAFED GFDNCDAGWL SDRTVRYPIT QSRPGCYGDR SSLPGVRSYG 240
  241 RRDPQELYDV YCFARELGGE VFYVGPARRL TLAGARAQCQ RQGAALASVG QLHLAWHEGL 300
  301 DQCDPGWLAD GSVRYPIQTP RRRCGGPAPG VRTVYRFANR TGFPAPGARF DAYCFRAHHH 360
  361 TAQHGDSEIP SSGDEGEIVS AEGPPGRELK PSLGEQEVIA PDFQEPLMSS GEGEPPDLTW 420
  421 TQAPEETLGS TPGGPTLASW PSSEKWLFTG APSSMGVSSP SDMGVDMEAT TPLGTQVAPT 480
  481 PTMRRGRFKG LNGRHFQQQG PEDQLPEVAE PSAQPPTLGA TANHMRPSAA TEASESDQSH 540
  541 SPWAILTNEV DEPGAGSLGS RSLPESLMWS PSLISPSVPS TESTPSPKPG AAEAPSVKSA 600
  601 IPHLPRLPSE PPAPSPGPSE ALSAVSLQAS SADGSPDFPI VAMLRAPKLW LLPRSTLVPN 660
  661 MTPVPLSPAS PLPSWVPEEQ AVRPVSLGAE DLETPFQTTI AAPVEASHRS PDADSIEIEG 720
  721 TSSMRATKHP ISGPWASLDS SNVTMNPVPS DAGILGTESG VLDLPGSPTS GGQATVEKVL 780
  781 ATWLPLPGQG LDPGSQSTPM EAHGVAVSME PTVALEGGAT EGPMEATREV VPSTADATWE 840
  841 SESRSAISST HIAVTMARAQ GMPTLTSTSS EGHPEPKGQM VAQESLEPLN TLPSHPWSSL 900
  901 VVPMDEVASV SSGEPTGLWD IPSTLIPVSL GLDESVLNVV AESPSVEGFW EEVASGQEDP 960
  961 TDPCENNPCL HGGTCHTNGT VYGCSCDQGY AGENCEIDID DCLCSPCENG GTCIDEVNGF1020
 1021 ICLCLPSYGG SLCEKDTEGC DRGWHKFQGH CYRYFAHRRA WEDAERDCRR RAGHLTSVHS1080
 1081 PEEHKFINSF GHENSWIGLN DRTVERDFQW TDNTGLQYEN WREKQPDNFF AGGEDCVVMV1140
 1141 AHESGRWNDV PCNYNLPYVC KKGTVLCGPP PAVENASLVG VRKIKYNVHA TVRYQCDEGF1200
 1201 SQHRVATIRC RNNGKWDRPQ IMCIKPRRSH RMRRHHHHPH RHHKPRKEHR KHKRHPAEDW1260
 1261 EKDEGDFC

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle