YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	VAX1_MOUSE
Protein type:	Transmembrane
Type Confidence:	0.95
Topology Confidence:	0.63
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFGKPDKMDV RCHSDTEAAR VSKNAHKESR EIKGAEGSLP AAFLKEPQGA FSGSGASEDC  60
   61 NKSKSNSSAD PDYCRRILVR DAKGSIREII LPKGLDLDRP KRTRTSFTAE QLYRLEMEFQ 120
  121 RCQYVVGRER TELARQLNLS ETQVKVWFQN RRTKQKKDQG KDSELRSVVS ETAATCSVLR 180
  181 LLEQGRLLSP PGLPALLPPC ATGALGSALR GPSLPALGAG AAAGSAAAAA AAAAATAPGP 240
  241 AGAASQHQPA VGGAPGPGPA GPGGLHAGAP TASHGLFSLP VPSLLGSVAS RLSSAPLTMA 300
  301 GSLAGNLQEL SARYLSSSAF EPYSRTNNKE GAEKKALD

Type	Start	End	Confidence
Cytoplasmic	1	215	0.63
Transmembrane Helix	216	237	0.85
Non-Cytoplasmic	238	266	0.81
Transmembrane Helix	267	289	0.66
Cytoplasmic	290	338	0.80