YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SC5D_MOUSE
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.53
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDLVLSAADY YFFTPYVYPA TWPEDNIIRQ TISLLIVTNL GAYILYFFCA TLSYYFVYDH  60
   61 SLMKHPQFLK NQVSREIVFT VKSLPWISIP TVSLFLLELR GYSKLYDDIG DFPNGWIHLM 120
  121 VSVVSFLFFT DMLIYRIHRG LHHRLVYKRI HKPHHIWKIP TPFASHAFHP VDGFLQSLPY 180
  181 HIYPFVFPLH KVVYLGLYVL VNVWTISIHD GDFRVPQILR PFINGSAHHT DHHMFFDYNY 240
  241 GQYFTLWDRI GGSFKHPSSF EGKGPHSYVK NMTEKESNSF AENGCKGKKV SNGEFTKNK

Type	Start	End	Confidence
Non-Cytoplasmic	1	34	0.53
Transmembrane Helix	35	58	0.86
Cytoplasmic	59	77	0.55
Transmembrane Helix	78	97	0.57
Non-Cytoplasmic	98	114	0.91
Transmembrane Helix	115	135	0.95
Cytoplasmic	136	155	0.90
Transmembrane Helix	156	173	0.62
Non-Cytoplasmic	174	186	0.56
Transmembrane Helix	187	208	0.61
Cytoplasmic	209	299	0.87