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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: ITAX_MOUSE
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.96
Topology Confidence: 0.89
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSCTWIAFLL LLGFVSCLGF NLDAEKLTHF HMDGAEFGHS VLQYDSSWVV VGAPKEIKAT  60
   61 NQIGGLYKCG YHTGNCEPIS LQVPPEAVNI SLGLSLAAAT NPSWLLACGP TVHHTCRENI 120
  121 YLTGLCFLLS SSFKQSQNFP TAQQECPKQD QDIVFLIDGS GSISSTDFEK MLDFVKAVMS 180
  181 QLQRPSTRFS LMQFSDYFRV HFTFNNFIST SSPLSLLGSV RQLRGYTYTA SAIKHVITEL 240
  241 FTTQSGARQD ATKVLIVITD GRKQGDNLSY DSVIPMAEAA SIIRYAIGVG KAFYNEHSKQ 300
  301 ELKAIASMPS HEYVFSVENF DALKDIENQL KEKIFAIEGT ETPSSSTFEL EMSQEGFSAV 360
  361 FTPDGPVLGA VGSFSWSGGA FLYPSNMRPT FINMSQENED MRDAYLGYST ALAFWKGVHS 420
  421 LILGAPRHQH TGKVVIFTQE SRHWRPKSEV RGTQIGSYFG ASLCSVDMDR DGSTDLVLIG 480
  481 VPHYYEHTRG GQVSVCPMPG VGSRWHCGTT LHGEQGHPWG RFGAALTVLG DVNGDSLADV 540
  541 AIGAPGEEEN RGAVYIFHGA SRQDIAPSPS QRISASQIPS RIQYFGQSLS GGQDLTRDGL 600
  601 VDLAVGSKGR VLLLRTRPIL RVSPTVHFTP AEISRSVFEC QEQVAPEQTL SDATVCLHIH 660
  661 ESPKTQLGDL RSTVTFDLAL DHGRLSTRAI FKETKTRALT RVKTLGLNKH CESVKLLLPA 720
  721 CVEDSVTPIT LRLNFSLVGV PISSLQNLQP MLAVDDQTYF TASLPFEKNC GADHICQDDL 780
  781 SVVFGFPDLK TLVVGSDLEL NVDVTVSNDG EDSYGTTVTL FYPVGLSFRR VAEGQVFLRK 840
  841 KEDQQWQRRG QHSLHLMCDS TPDRSQGLWS TSCSSRHVIF RGGSQMTFLV TFDVSPKAEL 900
  901 GDRLLLRARV GSENNVPGTP KTTFQLELPV KYAVYTMISS HDQFTKYLNF STSEKEKTSV 960
  961 VEHRFQVNNL GQRDVPVSIN FWVPIELKGE AVWTVMVSHP QNPLTQCYRN RLKPTQFDLL1020
 1021 THMQKSPVLD CSIADCLHLR CDIPSLGILD ELYFILKGNL SFGWISQTLQ KKVLLLSEAE1080
 1081 ITFNTSVYSQ LPGQEAFLRA QTKTVLEMYK VHNPVPLIVG SSVGGLLLLA IITAILYKAG1140
 1141 FFKRQYKEML EEANGQFVSD GTPTPQVAQ

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle