YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	GHRHR_MOUSE, GRF...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.85
Topology Confidence:	0.67
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	22	0.85
N-region	1	13
H-region	14	19
C-region	20	22
Cleavage Site	22	23
Non-Cytoplasmic	23	132	0.95
Transmembrane Helix	133	154	0.92
Cytoplasmic	155	162	0.85
Transmembrane Helix	163	186	0.69
Non-Cytoplasmic	187	206	0.77
Transmembrane Helix	207	230	0.67
Cytoplasmic	231	240	0.84
Transmembrane Helix	241	263	0.92
Non-Cytoplasmic	264	283	0.95
Transmembrane Helix	284	308	0.88
Cytoplasmic	309	326	0.91
Transmembrane Helix	327	345	0.94
Non-Cytoplasmic	346	359	0.83
Transmembrane Helix	360	380	0.90
Cytoplasmic	381	423	0.97

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDGLMWATRI LCLLSLCGVT LGHLHLECDF ITQLRDDELA CLQAAEGTNN TSLGCPGTWD  60
   61 GLLCWPPTGS GQWVSLPCPE FFSHFGSDTG FVKRDCTITG WSNPFPPYPV ACPVPLELLT 120
  121 KEKSYFSTVK IIYTTGHSIS IVALCVAIAI LVALRRLHCP RNYIHTQLFA TFILKASAVF 180
  181 LKDAAIFQGD STDHCSMSTV LCKVSVAISH LATMTNFSWL LAEAVYLSCL LASTSPRSKP 240
  241 AFWWLVLAGW GLPVLCTGTW VGCKHSFEDT ECWDLDNSSP CWWIIKGPIV LSVGVNFGLF 300
  301 LNIICILLRK LEPAQGGLHT RAQYWRLSKS TLLLIPLFGI HYIIFNFLPD SAGLDIRVPL 360
  361 ELGLGSFQGF IVAVLYCFLN QEVRTEISRK WYGHDPELLP ARRTCTEWTT PPRSRLKVLT 420
  421 SEC