YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	GTR3_MOUSE
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	7	0.84
Transmembrane Helix	8	26	0.88
Non-Cytoplasmic	27	60	0.92
Transmembrane Helix	61	85	0.91
Cytoplasmic	86	93	0.89
Transmembrane Helix	94	114	0.94
Non-Cytoplasmic	115	120	0.87
Transmembrane Helix	121	143	0.92
Cytoplasmic	144	153	0.85
Transmembrane Helix	154	174	0.91
Non-Cytoplasmic	175	183	0.76
Transmembrane Helix	184	205	0.90
Cytoplasmic	206	269	0.94
Transmembrane Helix	270	290	0.78
Non-Cytoplasmic	291	304	0.78
Transmembrane Helix	305	326	0.93
Cytoplasmic	327	333	0.85
Transmembrane Helix	334	355	0.93
Non-Cytoplasmic	356	360	0.86
Transmembrane Helix	361	388	0.78
Cytoplasmic	389	399	0.78
Transmembrane Helix	400	420	0.87
Non-Cytoplasmic	421	425	0.74
Transmembrane Helix	426	448	0.91
Cytoplasmic	449	493	0.97

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGTTKVTPSL VFAVTVATIG SFQFGYNTGV INAPETILKD FLNYTLEERL EDLPSEGLLT  60
   61 ALWSLCVAIF SVGGMIGSFS VGLFVNRFGR RNSMLLVNLL AIIAGCLMGF AKIAESVEML 120
  121 ILGRLLIGIF CGLCTGFVPM YIGEVSPTAL RGAFGTLNQL GIVVGILVAQ IFGLDFILGS 180
  181 EELWPGLLGL TIIPAILQSA ALPFCPESPR FLLINKKEED QATEILQRLW GTSDVVQEIQ 240
  241 EMKDESVRMS QEKQVTVLEL FRSPNYVQPL LISIVLQLSQ QLSGINAVFY YSTGIFKDAG 300
  301 VQEPIYATIG AGVVNTIFTV VSLFLVERAG RRTLHMIGLG GMAVCSVFMT ISLLLKDDYE 360
  361 AMSFVCIVAI LIYVAFFEIG PGPIPWFIVA ELFSQGPRPA AIAVAGCCNW TSNFLVGMLF 420
  421 PSAAAYLGAY VFIIFAAFLI FFLIFTFFKV PETKGRTFED IARAFEGQAH SGKGPAGVEL 480
  481 NSMQPVKETP GNA