YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	KCNA1_MOUSE
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.44
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTVMSGENAD EASTAPGHPQ DGSYPRQADH DDHECCERVV INISGLRFET QLKTLAQFPN  60
   61 TLLGNPKKRM RYFDPLRNEY FFDRNRPSFD AILYYYQSGG RLRRPVNVPL DMFSEEIKFY 120
  121 ELGEEAMEKF REDEGFIKEE ERPLPEKEYQ RQVWLLFEYP ESSGPARVIA IVSVMVILIS 180
  181 IVIFCLETLP ELKDDKDFTG TIHRIDNTTV IYTSNIFTDP FFIVETLCII WFSFELVVRF 240
  241 FACPSKTDFF KNIMNFIDIV AIIPYFITLG TEIAEQEGNQ KGEQATSLAI LRVIRLVRVF 300
  301 RIFKLSRHSK GLQILGQTLK ASMRELGLLI FFLFIGVILF SSAVYFAEAE EAESHFSSIP 360
  361 DAFWWAVVSM TTVGYGDMYP VTIGGKIVGS LCAIAGVLTI ALPVPVIVSN FNYFYHRETE 420
  421 GEEQAQLLHV SSPNLASDSD LSRRSSSTIS KSEYMEIEED MNNSIAHYRQ ANIRTGNCTT 480
  481 ADQNCVNKSK LLTDV

Type	Start	End	Confidence
Cytoplasmic	1	165	0.91
Transmembrane Helix	166	186	0.90
Non-Cytoplasmic	187	220	0.84
Transmembrane Helix	221	243	0.83
Cytoplasmic	244	252	0.86
Transmembrane Helix	253	271	0.56
Non-Cytoplasmic	272	284	0.49
Transmembrane Helix	285	302	0.44
Cytoplasmic	303	325	0.83
Transmembrane Helix	326	347	0.93
Non-Cytoplasmic	348	361	0.76
Transmembrane Helix	362	379	0.77
Cytoplasmic	380	386	0.53
Transmembrane Helix	387	408	0.88
Non-Cytoplasmic	409	495	0.70