YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	HHATL_MOUSE
Protein type:	Transmembrane
Type Confidence:	0.90
Topology Confidence:	0.57
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGIKTALPAA ELGLYSLVLS GALAYAGRGL LEASQDGAHR KAFRESVRPG WEYLGRKMDV  60
   61 ADFEWVMWFT NFRNVIVFAL SGHVLFAKLC TMVAPQLRSW MYAVYGVLAV VGTMGPWYLL 120
  121 LLLGHCMVLY VASLLGQRWL CLALGLASLA SFKVDPGISW QSGFVTGTFD LQDVLFHGGS 180
  181 SFTVLRCTSF ALESCAHPDR RYSLADLLKY NFYLPFFFFG PIMTFDRFHA QVSQEPVRPE 240
  241 GELWHIQAQA GLSAAAIVAV DVFFHFFYIL TIPSDLKFAS RLPDSALAGL AYSNLVYDWV 300
  301 KAAVLFGVVN TVARLDHLDP PQPPKCITAL YVFGETHFDR GINDWLCKYV YDHIGGDHST 360
  361 VIPELAASVA TFVVTTLWLG PCDIVYLWSV LNCFGLNFEL WVQKLAERGP LAQIEARLSE 420
  421 QMSRRVRALC GAVNFWAIIM YNLVSLNSLE FTELVARRLI LTGFPQTTLA VLFVTYCGVQ 480
  481 LVKERERSLA LEEEQRQDRE KLE

Type	Start	End	Confidence
Cytoplasmic	1	11	0.57
Transmembrane Helix	12	29	0.65
Non-Cytoplasmic	30	69	0.60
Transmembrane Helix	70	92	0.78
Cytoplasmic	93	100	0.50
Transmembrane Helix	101	121	0.90
Non-Cytoplasmic	122	127	0.42
Transmembrane Helix	128	152	0.71
Cytoplasmic	153	209	0.63
Transmembrane Helix	210	229	0.84
Non-Cytoplasmic	230	249	0.82
Transmembrane Helix	250	271	0.91
Cytoplasmic	272	425	0.70
Transmembrane Helix	426	445	0.90
Non-Cytoplasmic	446	458	0.80
Transmembrane Helix	459	479	0.81
Cytoplasmic	480	503	0.84