YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	LSHR_MOUSE
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.73
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	24	0.97
N-region	1	15
H-region	16	21
C-region	22	24
Cleavage Site	24	25
Non-Cytoplasmic	25	367	0.99
Transmembrane Helix	368	390	0.91
Cytoplasmic	391	399	0.88
Transmembrane Helix	400	422	0.90
Non-Cytoplasmic	423	442	0.90
Transmembrane Helix	443	466	0.86
Cytoplasmic	467	486	0.92
Transmembrane Helix	487	509	0.87
Non-Cytoplasmic	510	530	0.91
Transmembrane Helix	531	554	0.92
Cytoplasmic	555	575	0.92
Transmembrane Helix	576	598	0.91
Non-Cytoplasmic	599	611	0.84
Transmembrane Helix	612	631	0.73
Cytoplasmic	632	700	0.79

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGRRVPALRQ LLVLAMLVLK QSQLHSPELS GSRCPEPCDC APDGALRCPG PRAGLARLSL  60
   61 TYLPVKVIPS QAFRGLNEVV KIEISQSDSL ERIEANAFDN LLNLSEILIQ NTKNLLYIEP 120
  121 GAFTNLPRLK YLSICNTGIR TLPDVSKISS SEFNFILEIC DNLYITTIPG NAFQGMNNES 180
  181 ITLKLYGNGF EEVQSHAFNG TTLISLELKE NIYLEKMHSG TFQGATGPSI LDVSSTKLQA 240
  241 LPSHGLESIQ TLIATSSYSL KTLPSREKFT SLLVATLTYP SHCCAFRNLP KKEQNFSFSI 300
  301 FENFSKQCES TVREANNETL YSAIFEENEL SGWDYDYDFC SPKTLQCTPE PDAFNPCEDI 360
  361 MGYAFLRVLI WLINILAIFG NLTVLFVLLT SRYKLTVPRF LMCNLSFADF CMGLYLLLIA 420
  421 SVDSQTKGQY YNHAIDWQTG SGCSAAGFFT VFASELSVYT LTVITLERWH TITYAVQLDQ 480
  481 KLRLRHAIPI MLGGWIFSTL MATLPLVGVS SYMKVSICLP MDVESTLSQV YILSILLLNA 540
  541 VAFVVICACY VRIYFAVQNP ELTAPNKDTK IAKKMAILIF TDFTCMAPIS FFAISAAFKV 600
  601 PLITVTNSKV LLVLFYPVNS CANPFLYAVF TKAFQRDFFL LLSRFGCCKH RAELYRRKEF 660
  661 SACTFNSKNG FPRSSKPSQA ALKLSIVHCQ QPTPPRVLIQ