YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|560700
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.64
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	20	0.77
Transmembrane Helix	21	41	0.93
Non-Cytoplasmic	42	61	0.67
Transmembrane Helix	62	81	0.64
Cytoplasmic	82	101	0.55
Transmembrane Helix	102	121	0.85
Non-Cytoplasmic	122	162	0.63
Transmembrane Helix	163	186	0.88
Cytoplasmic	187	198	0.87
Transmembrane Helix	199	219	0.91
Non-Cytoplasmic	220	228	0.79
Transmembrane Helix	229	251	0.94
Cytoplasmic	252	513	0.99
Transmembrane Helix	514	533	0.72
Non-Cytoplasmic	534	559	0.71
Transmembrane Helix	560	581	0.93
Cytoplasmic	582	599	0.78
Transmembrane Helix	600	621	0.74
Non-Cytoplasmic	622	651	0.74
Transmembrane Helix	652	677	0.87
Cytoplasmic	678	680	0.70

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATLITSTLA ATAASSPLVD DLWMLILGFI IAFVLAFSVG ANDVANSFGT AVGSGVVTLK  60
   61 QACILASIFE TVGSVLLGAN VSETIAKGLI DVEMYRNSTQ ELMMAGSVSA MFGSAVWQLA 120
  121 ASFLKLPISG THCIVGATIG FSLVAKGQDG VKWSELIKIV MSWFISPLLS GIMSGILFFL 180
  181 VRAFILGKAD PTPNGLRALP VFYACTIGIN LFSIMYTGAP LLGFDKLPLW GTILISVGCA 240
  241 VFCALIVWFF VCPRMKRKIE RDIKSSPSES PLMEKKCSLK EDHEETKLSL GDAENRSPAS 300
  301 EVGSAVVPLR AVVEERTVSF KLGDLEEAPE RERLPSVDLK EETSIDSAMN GAVQLPNGHL 360
  361 VQFSQAVSNQ VNSSGHYQYH TVHKDSGLYK ELLHKLHLAK VGDCMGDSGD KPLRRNNSYT 420
  421 SYTMAICGMP LDPFRAKEGE QKGEEMEKLT WPNTDTKKRI RMDSYTSYCN AVSELHSASE 480
  481 MDMSIKAEIG LVDRKGSSGS LEEWCDQDKP EISLLFQFLQ ILTACFGSFA HGGNDVSNAI 540
  541 GPLVALYLVY ITGDVSSKMA IPIWLLLYGG IGICIGLWVW GRRVIQTMGK DLTPITPSSG 600
  601 FSIELASALT VVIASNIGLP ISTTHCKVGS VVSVGWLRSK KAVDWRLFRN IFMAWFVTVP 660
  661 ISGVISAAIM AIFRYVILRM