YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ARV1_MOUSE
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.45
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGTGGRRGTR SGKGTEGAAA TSSSCLYRCI ECNREAQELY RDYSHGVLKI TICKSCQKPV  60
   61 DKYIEYDPVI ILINAILCKT QAYRHILFNT KINIHGKLCM FCLLCEAYLR WWQLQDSSQS 120
  121 PAPDDVIRYA KEWDFYRMFV IASFEQAAFL TGIFAFLWVQ QPMTAKRAPD FVLLLKALLL 180
  181 SSYGKLLLIP AVIWEHDYTP LCLRLIKVFV LTSNFQAVRV TLNTNRRLSL LVVLSGLLLE 240
  241 SIVVFFFQRM EWDVSSDCAL YKSQDF

Type	Start	End	Confidence
Cytoplasmic	1	93	0.94
Transmembrane Helix	94	112	0.70
Non-Cytoplasmic	113	137	0.73
Transmembrane Helix	138	159	0.89
Cytoplasmic	160	171	0.70
Transmembrane Helix	172	194	0.68
Non-Cytoplasmic	195	200	0.57
Transmembrane Helix	201	218	0.45
Cytoplasmic	219	227	0.63
Transmembrane Helix	228	247	0.91
Non-Cytoplasmic	248	266	0.72