YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	UPK1A_MOUSE
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.74
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASAATEGEK GSPVVVGLLV VGNIIILLSG LALFAETVWV TADQYRVYPL MGVSGKDDVF  60
   61 AGAWIAIFCG FSFFVVASFG VGAALCRRRY MILTYLLLML IVYIFECASC ITSYTHRDYM 120
  121 VSNPSLITKQ MLTYYSADTD QGQELTRLWD RIMIEQECCG TSGPMDWVNY TSAFRAATPE 180
  181 VVFPWPPLCC RRTGNFIPIN EDGCRVGHMD YLFTKGCFEH IGHAIDSYTW GISWFGFAIL 240
  241 MWTLPVMLIA MYFYTTL

Type	Start	End	Confidence
Cytoplasmic	1	13	0.93
Transmembrane Helix	14	35	0.92
Non-Cytoplasmic	36	59	0.91
Transmembrane Helix	60	83	0.92
Cytoplasmic	84	91	0.83
Transmembrane Helix	92	115	0.89
Non-Cytoplasmic	116	231	0.95
Transmembrane Helix	232	254	0.92
Cytoplasmic	255	257	0.74