YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CCG2_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.89
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGLFDRGVQM LLTTVGAFAA FSLMTIAVGT DYWLYSRGVC KTKSVSENET SKKNEEVMTH  60
   61 SGLWRTCCLE GNFKGLCKQI DHFPEDADYE ADTAEYFLRA VRASSIFPIL SVILLFMGGL 120
  121 CIAASEFYKT RHNIILSAGI FFVSAGLSNI IGIIVYISAN AGDPSKSDSK KNSYSYGWSF 180
  181 YFGALSFIIA EMVGVLAVHM FIDRHKQLRA TARATDYLQA SAITRIPSYR YRYQRRSRSS 240
  241 SRSTEPSHSR DASPVGVKGF NTLPSTEISM YTLSRDPLKA ATTPTATYNS DRDNSFLQVH 300
  301 NCIQKDSKDS LHANTANRRT TPV

Type	Start	End	Confidence
Cytoplasmic	1	7	0.89
Transmembrane Helix	8	29	0.89
Non-Cytoplasmic	30	104	0.91
Transmembrane Helix	105	124	0.95
Cytoplasmic	125	133	0.76
Transmembrane Helix	134	157	0.91
Non-Cytoplasmic	158	179	0.86
Transmembrane Helix	180	202	0.92
Cytoplasmic	203	323	0.93