YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ERD22_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.49
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNIFRLTGDL SHLAAIVILL LKIWKTRSCA GISGKSQLLF ALVFTTRYLD LFTSFISLYN  60
   61 TSMKLIYIAC SYATVYLIYM KFKATYDGNH DTFRVEFLVV PVGGLSFLVN HDFSPLEILW 120
  121 TFSIYLESVA ILPQLFMISK TGEAETITTH YLFFLGLYRA LYLVNWIWRF YFEGFFDLIA 180
  181 VVAGVVQTIL YCDFFYLYIT KVLKGKKLSL PA

Type	Start	End	Confidence
Non-Cytoplasmic	1	7	0.49
Transmembrane Helix	8	24	0.62
Cytoplasmic	25	35	0.60
Transmembrane Helix	36	56	0.63
Non-Cytoplasmic	57	62	0.59
Transmembrane Helix	63	80	0.83
Cytoplasmic	81	91	0.69
Transmembrane Helix	92	111	0.74
Non-Cytoplasmic	112	117	0.79
Transmembrane Helix	118	138	0.90
Cytoplasmic	139	146	0.90
Transmembrane Helix	147	168	0.87
Non-Cytoplasmic	169	177	0.74
Transmembrane Helix	178	199	0.93
Cytoplasmic	200	212	0.95