YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|117616972
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.57
Topology Confidence:	0.51
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MARKALKLAS WTSVALAASG VYLYSNNYLD PNDFGAVRVG RAVATTAVIS YDYLTSLRSV  60
   61 PYGSEEYLQR RSQVHLRSAR RLFELCCANR GTFIKVGQHL GALDYLLPEE YTSTLKVLHS 120
  121 QAPQSSMQEV RQVIREDLGK EIHDLFLSFD DTPLGAASLA QVHKAVLHDG RTVAVKVQHP 180
  181 KVQAQSSKDI LLMEVLVLAV KQLFPDFEFM WLVDEAKKNL PLELDFLNEG RNAEKVAHML 240
  241 RHFDFLKVPQ IHWELSTKRV LLMEFVEGGQ VNDRAYMEKN QIDVNEISCH LGKMYSEMIF 300
  301 VNGFVHCDPH PGNVLVRKRP DTGKAEIVLL DHGLYQVLTE EFRLDYCHLW QSLIWTDMDG 360
  361 LKQYSQRLGA ADLYPLFACM LTARSWDSVK QGIGQAPVSA TEDSEIRNNA ACYLPEISQL 420
  421 LNHVPRQMLL ILKTNDLLRS IETTLGTRSS ASSFLNMSRC CIRALAEHKK RDAGSFFRRT 480
  481 QISFSEAFSL WQINLHELLL RVRALRLACW VSALLGWLTR APHRM

Type	Start	End	Confidence
Signal Peptide	1	20	0.98
N-region	1	11
H-region	12	17
C-region	18	20
Cleavage Site	20	21
Non-Cytoplasmic	21	501	0.99
Transmembrane Helix	502	521	0.51
Cytoplasmic	522	525	0.52