YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE40635
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.93
Topology Confidence:	0.74
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	18	0.92
N-region	1	9
H-region	10	15
C-region	16	18
Cleavage Site	18	19
Non-Cytoplasmic	19	274	0.99
Transmembrane Helix	275	297	0.88
Cytoplasmic	298	352	0.95
Transmembrane Helix	353	373	0.87
Non-Cytoplasmic	374	403	0.90
Transmembrane Helix	404	423	0.91
Cytoplasmic	424	444	0.89
Transmembrane Helix	445	464	0.93
Non-Cytoplasmic	465	471	0.87
Transmembrane Helix	472	492	0.91
Cytoplasmic	493	502	0.84
Transmembrane Helix	503	523	0.90
Non-Cytoplasmic	524	530	0.86
Transmembrane Helix	531	554	0.85
Cytoplasmic	555	590	0.96
Transmembrane Helix	591	610	0.96
Non-Cytoplasmic	611	616	0.77
Transmembrane Helix	617	637	0.87
Cytoplasmic	638	647	0.88
Transmembrane Helix	648	668	0.90
Non-Cytoplasmic	669	739	0.74

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTFLLVLQIL LFLSLDKCQD FQEIELGINN VNLTTEGNLI ANLYQVILNS TNEPPAIRVS  60
   61 VDSLAATIKY PFTMTVVRGK TVHNVALPRI QSHQGKEFQY WFASDTLCDE DRSAEQLSQP 120
  121 VQISIASSLP SLFNLRVKSV NNFIIGNKTF KSKGSPSEPR YYMYTFPDDV DKVDIRVTSP 180
  181 SEICGKIVAR RVNCPLFDAS GLLEQSETFF YQSFTTFAGF SLKKSVIGRQ FHLAFTVHPD 240
  241 ETLCGTPDNF FDIPNNPARI KLAVISVTPV KDNLWLPLFP ILLYSISMST VIMLTYLKYK 300
  301 WLDRRENNEP NILDGTDSEG NVLVDKIWLF DKPSMIVSHK EYQKLKLVKD SKYFNFLFFQ 360
  361 IFGSILPSLT TLFDKQKTSN NLNFCYLNFL CSLEFLCFKS FNSMTSASSL AVIGVLNLII 420
  421 VFREKIFSFK IPRLPTTHGL QQRDAPKVVC FLGLVSMGIL WTITNNCPHR TTIHLDMYTS 480
  481 SWIFYAAFMW IYSKRHGVRK WQQFFIIAVS SIYGCLTLAE NMFNVNSVSR WVVKILFSLT 540
  541 AISSTVYFCY QYFYERPSGL QGNQWITPPF ESPQLYLSDA NGIYNPLRSK VVLIVLLICL 600
  601 SVVCAILPLL TSESASNSAI ICLGRGQIGI YLVYYAVQKC RFERQSFTLF YKICCTLIFI 660
  661 VFMLMECLNR YLANFMLTYN VLLTPAKSRQ LNMDCVLPGI DLNDLRHYSC AVDCFLFICL 720
  721 MDFIDSNIKD VPKKHIFVF