YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|12847527
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	103	0.97
Transmembrane Helix	104	127	0.84
Non-Cytoplasmic	128	165	0.95
Transmembrane Helix	166	187	0.92
Cytoplasmic	188	195	0.85
Transmembrane Helix	196	215	0.94
Non-Cytoplasmic	216	223	0.80
Transmembrane Helix	224	245	0.93
Cytoplasmic	246	255	0.77
Transmembrane Helix	256	275	0.93
Non-Cytoplasmic	276	284	0.68
Transmembrane Helix	285	305	0.92
Cytoplasmic	306	391	0.97
Transmembrane Helix	392	411	0.90
Non-Cytoplasmic	412	447	0.89
Transmembrane Helix	448	467	0.90
Cytoplasmic	468	511	0.97
Transmembrane Helix	512	534	0.90
Non-Cytoplasmic	535	542	0.77
Transmembrane Helix	543	566	0.84
Cytoplasmic	567	573	0.75
Transmembrane Helix	574	597	0.83
Non-Cytoplasmic	598	604	0.83
Transmembrane Helix	605	628	0.89
Cytoplasmic	629	654	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPWLPGFTYL WRQDGSQIHC FFRGRRRGET GGSEARWVWH AGKTPRVDAI WNWDPGSQEI  60
   61 RSVEAPGRLC VTPGVKSCGR QVCRGQSLGH HGSHAEAGVP QRWWMACTAV VENLFFSAVL 120
  121 LGWASLLIML KKEGFYSSLC PAENRTNTTQ DEQHQWTSCD QQEKMLNLGF TIGSFLLSAT 180
  181 TLPLGILMDR FGPRPLRLVG SACFAASCTL MALASRDTEV LSPLIFLALS LNGFAGICLT 240
  241 FTSLTLPNMF GNLRSTFMAL MIGSYASSAI TFPGIKLIYD AGVPFTVIMF TWSGLACLIF 300
  301 LNCALNWPAE AFPAPEEVDY TKKIKLIGLA LDHKVTGDRF YTHVTIVGQR LSQKSPSLEE 360
  361 GADAFISSPD IPGTSEETPE KSVPFRKSLC SPIFLWSLVT MGMTQLRVIF YMGAMNKILE 420
  421 FIVTGGKERE TNEQRQKVEE TVEFYSSIFG VMQLLCLLTC PLIGYIMDWR IKDCVDAPTE 480
  481 GTLNENASFG DARDGASTKF TRPRYRKVQK LTNAINAFTL TNILLVGFGI ACLIKNLHLQ 540
  541 LLAFVLHTIV RGFFHSACGG LYAAVFPSNH FGTLTGLQSL ISAVFALLQQ LLFMAMVGPL 600
  601 HGDPFWVNLG LLLLSFLGFL LPSYLYYYRS RLQREYATNL VDPQKVLNTS KVAT