YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	HME1_MOUSE
Protein type:	Globular with Signal Peptide
Type Confidence:	0.37
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEEQQPEPKS QRDSGLGAVA AAAPSGLSLS LSPGASGSSG SDGDSVPVSP QPAPPSPPAA  60
   61 PCLPPLAHHP HLPPHPPPPP PPPPPPPQHL AAPAHQPQPA AQLHRTTNFF IDNILRPDFG 120
  121 CKKEQPLPQL LVASAAAGGG AAAGGGSRVE RDRGQTGAGR DPVHSLGTRA SGAASLLCAP 180
  181 DANCGPPDGS QPATAVGAGA SKAGNPAAAA AAAAAAAAAA VAAAAAAASK PSDSGGGSGG 240
  241 NAGSPGAQGA KFPEHNPAIL LMGSANGGPV VKTDSQQPLV WPAWVYCTRY SDRPSSGPRT 300
  301 RKLKKKKNEK EDKRPRTAFT AEQLQRLKAE FQANRYITEQ RRQTLAQELS LNESQIKIWF 360
  361 QNKRAKIKKA TGIKNGLALH LMAQGLYNHS TTTVQDKDES E

Type	Start	End	Confidence
Signal Peptide	1	37	0.39
N-region	1	28
H-region	29	34
C-region	35	37
Cleavage Site	37	38
Non-Cytoplasmic	38	401	0.86