YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	LMAN1_MOUSE
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.97
Topology Confidence:	0.93
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAVSRRRVPQ AGARSFFCAL LLSFSQFTGS DGTGGDAAAP GAAGTQAELP HRRFEYKYSF  60
   61 KGPHLVQSDG TVPFWAHAGN AIPSADQIRI APSLKSQRGS VWTKAKAAFE NWEVEVTFRV 120
  121 TGRGRIGADG LAIWYTENQG LDGPVFGSAD TWNGVGIFFD SFDNDGKKNN PAIVVIGNNG 180
  181 QINYDHQNDG ATQALASCQR DFRNKPYPVR AKITYYQKTL TVMINNGFTP DKNDYEFCAK 240
  241 VENMVIPTQG HFGISAATGG LADDHDVLSF LTFQLTEPGK EPPTAEKDIS EKEKEKYQEE 300
  301 FEHFQQELDK KKEEFQKGHP DLQGQPADDI FESIGDRELR QVFEGQNRIH LEIKQLNRQL 360
  361 DMILDEQRRY VSSLTEEISR RGAGTPGQPG QVSQQELDTV VKSQQEILRQ VNEVKNSMSE 420
  421 TVRLVSGIQH PGSAGVYETT QHFMDIKEHL HVVKRDIDSL AQRSMPSNEK PKCPDLPPFP 480
  481 SCLSTIHFVI FVVVQTVLFV GYIMYRTQQE AAAKKFF

Type	Start	End	Confidence
Signal Peptide	1	30	0.98
N-region	1	21
H-region	22	27
C-region	28	30
Cleavage Site	30	31
Non-Cytoplasmic	31	485	0.99
Transmembrane Helix	486	505	0.94
Cytoplasmic	506	517	0.93