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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|20385913, gi|...
Protein type: Globular with Signal Peptide
Type Confidence: 0.93
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNEKPCFAAL SMAGLQLMTP ASSPMGPFFG LPWQQEAIHD NIYTPRKYQV ELLEAALDHN  60
   61 TIVCLNTGSG KTFIAVLLTK ELAHQIRGDL NPHAKRTVFL VNSANQVCQQ VSAVRTHSDL 120
  121 KVGEYSDLEV NASWTKERWS QEFTKHQVLI MTCYVALTVL KNGYLSLSDI NLLVFDECHL 180
  181 AILDHPYREI MKLCESCPSC PRILGLTASI LNGKCDPEEL EEKIQKLERI LRSDAETATD 240
  241 LVVLDRYTSQ PCEIVVDCGP FTDRSGLYER LLMELEAALD FINDCNVAVY SKERDSTLIS 300
  301 KQILSDCRAV LVVLGPWCAD KVAGMMVREL QKYIKHEQEE LHRKFLLFTD TLLRKIHALC 360
  361 EEYFSPASLD LKYVTPKVMK LLEILRKYKP YERQQFESVE WYNNRNQDNY VSWSDSEDDD 420
  421 DDEEIEEKEK PETNFPSPFT NILCGIIFVE RRYTAVVLNR LIKEAGKQDP ELAYISSNFI 480
  481 TGHGIGKNQP RSKQMEAEFR KQEEVLRKFR AHETNLLIAT SVVEEGVDIP KCNLVVRFDL 540
  541 PTEYRSYVQS KGRARAPISN YVMLADTDKI KSFEEDLKTY KAIEKILRNK CSKSADGAEA 600
  601 DVHAGVDDED AFPPYVLRPD DGGPRVTINT AIGHINRYCA RLPSDPFTHL APKCRTRELP 660
  661 DGTFYSTLYL PINSPLRASI VGPPMDSVRL AERVVALICC EKLHKIGELD EHLMPVGKET 720
  721 VKYEEELDLH DEEETSVPGR PGSTKRRQCY PKAIPECLRD SYPKPDQPCY LYVIGMVLTT 780
  781 PLPDELNFRR RKLYPPEDTT RCFGILTAKP IPQIPHFPVY TRSGEVTISI ELKKSGFILS 840
  841 QQMLELITRL HQYIFSHILR LEKPALEFKP TGAESAYCVL PLNVVNDSGT LDIDFKFMED 900
  901 IEKSEARIGI PSTKYSKETP FVFKLEDYQD AVIIPRYRNF DQPHRFYVAD VYTDLTPLSK 960
  961 FPSPEYETFA EYYKTKYNLD LTNLNQPLLD VDHTSSRLNL LTPRHLNQKG KALPLSSAEK1020
 1021 RKAKWESLQN KQILVPELCA IHPIPASLWR KAVCLPSILY RLHCLLTAEE LRAQTASDAG1080
 1081 VGVRSLPVDF RYPNLDFGWK KSIDSKSFIS TCNSSLAESD NYCKHSTTVV PEHAAHQGAT1140
 1141 RPSLENHDQM SVNCKRLPAE SPAKLQSEVS TDLTAINGLS YNKNLANGSY DLVNRDFCQG1200
 1201 NQLNYFKQEI PVQPTTSYPI QNLYNYENQP KPSNECPLLS NTYLDGNANT STSDGSPAVS1260
 1261 TMPAMMNAVK ALKDRMDSEQ SPSVGYSSRT LGPNPGLILQ ALTLSNASDG FNLERLEMLG1320
 1321 DSFLKHAITT YLFCTYPDAH EGRLSYMRSK KVSNCNLYRL GKKKGLPSRM VVSIFDPPVN1380
 1381 WLPPGYVVNQ DKSNSEKWEK DEMTKDCLLA NGKLGEACEE EEDLTWRAPK EEAEDEDDFL1440
 1441 EYDQEHIQFI DSMLMGSGAF VRKISLSPFS ASDSAYEWKM PKKASLGSMP FASGLEDFDY1500
 1501 SSWDAMCYLD PSKAVEEDDF VVGFWNPSEE NCGVDTGKQS ISYDLHTEQC IADKSIADCV1560
 1561 EALLGCYLTS CGERAAQLFL CSLGLKVLPV IKRTSREKAL DPAQENGSSQ QKSLSGSCAA1620
 1621 PVGPRSSAGK DLEYGCLKIP PRCMFDHPDA EKTLNHLISG FETFEKKINY RFKNKAYLLQ1680
 1681 AFTHASYHYN TITDCYQRLE FLGDAILDYL ITKHLYEDPR QHSPGVLTDL RSALVNNTIF1740
 1741 ASLAVKYDYH KYFKAVSPEL FHVIDDFVKF QLEKNEMQGM DSELRRSEED EEKEEDIEVP1800
 1801 KAMGDIFESL AGAIYMDSGM SLEVVWQVYY PMMQPLIEKF SANVPRSPVR ELLEMEPETA1860
 1861 KFSPAERTYD GKVRVTVEVV GKGKFKGVGR SYRIAKSAAA RRALRSLKAN QPQVPNS

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle