YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	OSTC_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 METLYRVPFL VLECPNLKLK KPPWVHMPSA MTVYALVVVS YFLITGGIIY DVIVEPPSVG  60
   61 SMTDEHGHQR PVAFLAYRVN GQYIMEGLAS SFLFTMGGLG FIILDRSNAP NIPKLNRFLL 120
  121 LFIGFVCVLL SFFMARVFMR MKLPGYLMG

Type	Start	End	Confidence
Cytoplasmic	1	29	0.94
Transmembrane Helix	30	53	0.87
Non-Cytoplasmic	54	82	0.95
Transmembrane Helix	83	104	0.92
Cytoplasmic	105	117	0.83
Transmembrane Helix	118	139	0.93
Non-Cytoplasmic	140	149	0.95