YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	USE1_MOUSE
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.73
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAQAEGAYHR PLATSRLELN LVRLLCRCES MAAEKREPDE WRLEKYVGAL EDMLQALKVQ  60
   61 ASKPASEVIS EYSRKVDFLK GMLQAEKLTS SSEKALANQF LAPGRVPTTA KERVPATKTV 120
  121 HLQSRARYTS EMRSELLGME PSGECEVDMR KRAAKGSRPA DERQSASELD LVLQRHQGLQ 180
  181 EKLAEEMLGL ARSLKTNTLA AQSVIKKDNQ TLSHSLKMAD QNLEKLKLES ERLEQHAQKS 240
  241 VNWLLWAMLI VVCFVFISMI LFIRIMPRLK

Type	Start	End	Confidence
Non-Cytoplasmic	1	242	0.89
Transmembrane Helix	243	263	0.97
Cytoplasmic	264	270	0.73