YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|12848404
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.59
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFNSTEIKFS VKSFSCSGPV KFTIEWHLKY HTCHNDYPDL EEELSQRHEL HADPDVCAYF  60
   61 KNIDCWTTKS ENLDCSSDSQ AFPSLNNKEL TGIRNISSQE GSTDVVARTQ KDGFHIFIVS 120
  121 IKTEKTDAVW DLNVSLSMVG PHGYISASDW PLMIFYMGMC IVYILYGVLW LLWSACYWKD 180
  181 ILRIQFWIAA VIFLGMLEKA IFYSEYQNIN STGLSTQGLL IFAELISAVK RTLARLLVII 240
  241 VSLGYGIVKP RLGTVMHRVI GLGLLYLIFA AIEGVMRVIG GSKHLAVVLT DIVLAVIDSI 300
  301 FVWFISFTMS FQNSWCLAET MKTLRLRKNT VKFSLYRHFT NTLIFAVLAS IVFMVWTTKT 360
  361 FRIAKCQSDW MELWVDDAFW SFLFSVILIV IMFLWRPSAN NQRYAFMPLI DDSDDEVEEF 420
  421 MVTSENLTEG IKLRASKTVS NGTAKPTSDN FDEDLKWVEE NIPSSFTDVA LPVLVDSDEE 480
  481 IMTRSEIAEK MFSSEKIM

Type	Start	End	Confidence
Cytoplasmic	1	127	0.77
Transmembrane Helix	128	145	0.66
Non-Cytoplasmic	146	151	0.77
Transmembrane Helix	152	173	0.94
Cytoplasmic	174	183	0.72
Transmembrane Helix	184	203	0.92
Non-Cytoplasmic	204	219	0.72
Transmembrane Helix	220	248	0.59
Cytoplasmic	249	254	0.80
Transmembrane Helix	255	279	0.81
Non-Cytoplasmic	280	291	0.71
Transmembrane Helix	292	316	0.78
Cytoplasmic	317	334	0.87
Transmembrane Helix	335	357	0.88
Non-Cytoplasmic	358	377	0.87
Transmembrane Helix	378	397	0.94
Cytoplasmic	398	498	0.92