YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ACKR1_MOUSE
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGNCLYPVET LSLDKNGTQF TFDSWNYSFE DNYSYELSSD YSLTPAAPCY SCNLLDRSSL  60
   61 PFFMLTSVLG MLASGSILFA ILRPFFHWQI CPSWPILAEL AVGSALFSIA VPILAPGLHS 120
  121 AHSTALCNLG YWVWYTSAFA QALLIGCYAC LNPRLNIGQL RGFTLGLSVG LWGAAALSGL 180
  181 PVALASDVYN GFCTFPSSRD MEALKYTHYA ICFTIFTVLP LTLLAAKGLK IALSKGPGPW 240
  241 VSVLWIWFIF WWPHGMVLIF DALVRSKTVL LYTCQSQKIL DAMLNVTEAL SMLHCVATPL 300
  301 LLALFCHQTT RRSLSSLSLP TRQASQMDAL AGKS

Type	Start	End	Confidence
Non-Cytoplasmic	1	61	0.86
Transmembrane Helix	62	82	0.93
Cytoplasmic	83	95	0.64
Transmembrane Helix	96	116	0.89
Non-Cytoplasmic	117	130	0.76
Transmembrane Helix	131	152	0.90
Cytoplasmic	153	162	0.77
Transmembrane Helix	163	185	0.91
Non-Cytoplasmic	186	205	0.85
Transmembrane Helix	206	226	0.93
Cytoplasmic	227	235	0.73
Transmembrane Helix	236	255	0.79
Non-Cytoplasmic	256	289	0.76
Transmembrane Helix	290	307	0.90
Cytoplasmic	308	334	0.83