YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|16660119, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.92
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDSKEMGKR QLRPLDEELL TSSHTRHSIK GFGFQTNSGF SSFTGCLVHS QVPLALQVLF  60
   61 LAVCSVLLVV ILVKDRLCRS CPWDWTHFQG SCYFFSVAQK SWNDSATACH NVGAQLVVIK 120
  121 SDEEQNFLQQ TSKKRGYTWM GLIDMSKEST WYWVDGSPLT LSFMKYWSKG EPNNLGEEDC 180
  181 AEFRDDGWND TKCTNKKFWI CKKLSTSCPS K

Type	Start	End	Confidence
Non-Cytoplasmic	1	53	0.56
Transmembrane Helix	54	73	0.85
Cytoplasmic	74	211	0.82