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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|3236370
Protein type: Globular with Signal Peptide
Type Confidence: 0.98
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRKHRHLPLV AVFSLLFSGI AMTRAQQHGV MEVNKRDIVF LVDGSSSLGP SNFNAIRDFV  60
   61 TRVIQRLEIG QDLVQVSVAQ YADTVSPEFY LNSYTNKRDA VTAVRKMRAL NGSALYTGSS 120
  121 LDFVRNNLFT SSAGHRAAEG VPKLLVLITG GKSLDEVSQP ARELKRGSIM ALAVGSKAAD 180
  181 EDELKEIAFD SSLVFIPAEF RPAPLQNMLP SLMAPLRTLT GTTEGSKRDI LFLFDGSVNV 240
  241 LGQFPAVRDF LYRFIEELDV KPDGTRVAIA QFSDDVRLES RFSEHQTKAE ILNLVKKMKL 300
  301 KTGKALNLGY ALDYALRNIF VRSAGSRIED NVQQFLVLLV AGRSSDAVAG PASSLKQRGV 360
  361 VPFIFQAKNA NPSELEQIVL SPAFILAAES LPKIGDLQSQ IVSLLKAEQG SGPVSGEKDV 420
  421 VFLIDGSEGV RSGFPLLKDF VQRVVESLDV GPDRVRVALV QYSDRTRPEF YLNSHMDQQG 480
  481 VISAIRRLTL LGGTTPNTGA ALEFVLRNIL TSSTGSRIAE GVPQLLIVLT AEPSGDDVRG 540
  541 PSVVLKQGGA VPIGIGIGNA DISEMQTISF IPDFAVAIPT FRELGTIQRV ISERVIQLNR 600
  601 EELSSLKPIL TPSTGAGVGS KKDVVFLIDG SRNAGPEFQY IRTQIERIVE YLDIGFDTTR 660
  661 VAVIQFSEDS KMEFPLNAHF SKDEVQNTVR RLRPKGGSQV YIGNALEYVL KNIFQRPLGS 720
  721 RIEEGVPQFL VLISSGKYDD EVDDSAVELK QFGVAPLTIA RHTDQEELVK ISLSPEYVYS 780
  781 VSTFRELPRL EQKLLTPITT LTSQQIHQIL ASTRYPPSVV ESDAADIVFL IDSSDAVKPD 840
  841 GIAHIRDFVS RIVRRLNIGP SKVRIGVVQF SNDVFPEFYL KTHKSQSSVL EAIRRLRFKG 900
  901 GSPLNTGRAL EFVARNLFVK SAGSRIEDGV PQHLVLFLGG KSQDDVARHA QVISSSGIVS 960
  961 LGIGDRNIDR TDLQTITNDP RLVFTVREFR ELPNIEERVM LSFGPSGATP QPPGVDLPSP1020
 1021 SRPEKKKADI VFLLDGSINF RRDSFQEVLR FASVIVDTVY EDGDSIRVGL VQYNSDPTDE1080
 1081 FFLRDFSTKR QIIDAINKVV YKGGRHANTR VGIEHLLRNH FVPEAGSRLD VRVPQIAFVI1140
 1141 TGGKSVEDAQ DVSLALTQKG VKVFAVGVRN IDSEEVGKIA SNSATAFRVG SVQELSELSE1200
 1201 TVLETLHDAM HETLCPGVTD VSKACNLEVI LGFDGSRDQN VFVSQKGLES KVDIILNRTS1260
 1261 QIQRISCSGN QLPTVRVSVM ANTPSGPVEA FDFAEYQPEL FEKFRNMRSQ RPYVLTADTL1320
 1321 KLYQNKFRQS SPDTVKVVIH FTDGADGDMA DLYRASEELR QAGAQALILV GLERVANLER1380
 1381 LMHLEFGRGF MYDRPLRLNL LDLDYELAEQ LDNIAEKACC GVPCKCSGER GDRGPIGSIG1440
 1441 PKGISGEDGY RGYPGDEGDP GERGPPGVNG TQGFQGCPGQ RGVKGSRGFP GEKGELGEIG1500
 1501 LDGLDGEEGD KGLPGSSGEK GSPGRRGDKG PKGDKGERGD VGIRGDPGDS GRDSQQRGPK1560
 1561 GETGDIGPMG LPGRDGIPGS PGDPGKDGGS GRRGPAGAKG NRGGPGQPGF EGEQGTRGSQ1620
 1621 GPPGPIGPPG LIGEQGFPGP RGGGGTAGAP GERGRTGPLG RKGEPGEPGP KGSIGNRGPR1680
 1681 GETGDDGRDG VGSEGRRGKK GERGFPGYPG PKGTPGEPGA DGPPGPKGIR GRRGNSGPPG1740
 1741 ATGQKGDPGY PGPSGHKGNR GDSVDQCALI QSIRDKCPCC YGPLECPVLP TELAFALDTS1800
 1801 EGVTQDTFSR MREVLLGIVG DLTIAESNCP RGARVAVVTY NNEVTTEIRF ASSKKKSALL1860
 1861 DSIQNLQVAL TSKQQSLETA MSFVARNTFK RVRSGFPMRK VAVFFSNKPT RASPQLREAV1920
 1921 LKLSDAGITP LFLTSQEDRQ LINALQINNT AVGHALVLPA RRDLTDFLKN VLTCHVCLDI1980
 1981 CNIDPSCGFG SWRPSFRDRR AAGSDVDIDL AFILDSSEAT TLFQFNEMKK YIGYVIRQLD2040
 2041 LSPDPKASQH FARVAVVQQS TYESVDNASV PPVKVEFSLT DYGAKEKLLD FLSRRMTQLQ2100
 2101 GTMGLGNAIE YTIENIFESA PNPRDLKIMV LMLTGDMQRQ QLEEAQRAIL QAKCKGYFLV2160
 2161 VLGIGRKVNI KEVYSFASEP NDVFFKFVDK STELNEEPLM RFGRLLPSFV SSENAFYLPP2220
 2221 DFRKQCDWFQ GDQPVKNGVK FGHKQINPPH TANSSLTSKV VTTIKPSNSS KPTAIVNLTP2280
 2281 AKPAPARPAP AQPVLAKPDP AKPAQARPAP AKPASAKLVP PQPVHVQPAP AQTASVRPAP2340
 2341 AKPAPPQPAA AKPVPAKPAV PAQPAPPQPA AAKPVPAKPA VPAQPAAAQP MPAQPVLTKS2400
 2401 AAVKPASANK PVAAKPVATN TATATARPAL AAKPAAAKPA ATRDPLAAAV RPVATKPEAP2460
 2461 RQQAKPAATK PATTKPLARV SREVQVSEVT ENSARLHWER PEPSSSFFYD LTVTSAHDQS2520
 2521 LVLRQNLTVT DRVIGGLLAG QLYHVVVVSY LQSQVRAIYQ GSFNTKKTQP PPLQAAHRAS2580
 2581 SSTINLMVNT EPLFLTKTDI CKLSRDAGTC VDFKLLWHYD LESKSCKRFW YGGCGGNENR2640
 2641 FHSQEECEKM CSPELTV

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle