YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|254028172, gi...
Protein type:	Transmembrane
Type Confidence:	0.60
Topology Confidence:	0.51
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTGKEENMQS ANRVLRISQL DALELNKALE QLVWSQFTQC FHGFKPGLLA RFEPEVKAFL  60
   61 WLFLWRFTIY SKNATVGQSV LNIQYKNDSS LNLIYQPPSK TQKLWYAVCT IGGKWLEERC 120
  121 YDLFRNRHLA SFGKAKQFMN FLVGLLKLGE LINFLIFLQK GKFATLTERL LGIHSVFCKP 180
  181 QNMREVGFEY MNRELLWHGF AEFLIFLLPL INIQKLKAKL SSWCIPLTGA AGHDSTLGSS 240
  241 GKECALCGEW PTMPHTIGCE HVFCYYCVKS SFLFDIYFTC PKCGTEVHSV QPLKSGIEMS 300
  301 EVNAL

Type	Start	End	Confidence
Non-Cytoplasmic	1	194	0.58
Transmembrane Helix	195	213	0.53
Cytoplasmic	214	305	0.51