YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PG2IP_MOUSE
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.30
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	11	0.77
Transmembrane Helix	12	32	0.84
Non-Cytoplasmic	33	40	0.75
Transmembrane Helix	41	61	0.91
Cytoplasmic	62	90	0.64
Transmembrane Helix	91	113	0.85
Non-Cytoplasmic	114	119	0.57
Transmembrane Helix	120	141	0.90
Cytoplasmic	142	190	0.73
Transmembrane Helix	191	213	0.90
Non-Cytoplasmic	214	236	0.87
Transmembrane Helix	237	257	0.91
Cytoplasmic	258	274	0.77
Transmembrane Helix	275	298	0.87
Non-Cytoplasmic	299	315	0.83
Transmembrane Helix	316	339	0.85
Cytoplasmic	340	350	0.73
Transmembrane Helix	351	368	0.89
Non-Cytoplasmic	369	394	0.77
Transmembrane Helix	395	412	0.87
Cytoplasmic	413	421	0.60
Transmembrane Helix	422	437	0.30
Non-Cytoplasmic	438	699	0.52

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPGLWRAIAL ETLLGYVSWS LYHGLSPMIY YFPLQTLELT GLEFFCVAFL SPILLTIPPL  60
   61 WKLVNKKWTL SLLRIVTVGS IASFEAPNAK LRLMVLALGV SSSLIVQTVT WWSGSGLQRY 120
  121 LKIWGFILGH VLLLVLRIWY TSLNPIWSYQ MSNRVILTLS AVAVLDRIGT DGDYRNPEGK 180
  181 KPREVATGRT SLSSWLLPGA AFGSLLFLTH WIFGEVSIVS RWAVSGHPHP GPDPNPFGGA 240
  241 VLLGFSSGLM LSGSSWLHDA GLAWWMTGAA SAMGLLYLRT WAAAVSGCVL AVFTGSMWPQ 300
  301 VLGHLVNSGK NSGEAMATGM ILYVLQTFFC AWCTAFKFVP GGVYARERSD VLLGTIMVII 360
  361 GLSMLFGPKK NLDFLLQTKN SPKTLLRCSE KYMKLILWLF VGVGLLGLGL RHRTYERQLG 420
  421 RGAPATVVSA AIWPFRFGYD NEGWPNLERS AQLLKETGAD FITILESDAS KPYIGNNDLT 480
  481 MWLGEKLGFY TDFGPSTRDH TWGIMVLSRY PIVRSEHHLL PSPEGEIAPA ITMTVNVSNR 540
  541 LVDFVVTHFG NHEDDLDRKL QAIAVSKLLK NCSNQVIFLG YITSEPGSRD YIQLTKHGNV 600
  601 KDIDSSDGDR WCEYIMYRGL IRLGYARISH AELSDSEIQM AKFRIPDDPA NYRDNQKVVI 660
  661 DHRGVPKNIH FNPRFGSYKE GHNYENTHHF HMNTPKYFV