YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CEAM1_MOUSE
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.98
Topology Confidence:	0.91
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MELASAHLHK GQVPWGGLLL TASLLASWSP ATTAEVTIEA VPPQVAEDNN VLLLVHNLPL  60
   61 ALGAFAWYKG NTTAIDKEIA RFVPNSNMNF TGQAYSGREI IYSNGSLLFQ MITMKDMGVY 120
  121 TLDMTDENYR RTQATVRFHV HPILLKPNIT SNNSNPVEGD DSVSLTCDSY TDPDNINYLW 180
  181 SRNGESLSEG DRLKLSEGNR TLTLLNVTRN DTGPYVCETR NPVSVNRSDP FSLNIIYGPD 240
  241 TPIISPSDIY LHPGSNLNLS CHAASNPPAQ YFWLINEKPH ASSQELFIPN ITTNNSGTYT 300
  301 CFVNNSVTGL SRTTVKNITV LEPVTQPFLQ VTNTTVKELD SVTLTCLSND IGANIQWLFN 360
  361 SQSLQLTERM TLSQNNSILR IDPIKREDAG EYQCEISNPV SVRRSNSIKL DIIFDPTQGG 420
  421 LSDGAIAGIV IGVVAGVALI AGLAYFLYSR KSGGGSDQRD LTEHKPSTSN HNLAPSDNSP 480
  481 NKVDDVAYTV LNFNSQQPNR PTSAPSSPRA TETVYSEVKK K

Type	Start	End	Confidence
Signal Peptide	1	34	0.98
N-region	1	25
H-region	26	31
C-region	32	34
Cleavage Site	34	35
Non-Cytoplasmic	35	423	0.99
Transmembrane Helix	424	448	0.91
Cytoplasmic	449	521	0.98