YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|155369644, gi...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.71
Topology Confidence:	0.71
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGAPHFGPGG VQVGALLLLG FAGLVSGLSL EPVYWNSANK RFQAEGGYVL YPQIGDRLDL  60
   61 LCPRARPPGP HSSPSYEFYK LYLVEGAQGR RCEAPPAPNL LLTCDRPDLD LRFTIKFQEY 120
  121 SPNLWGHEFR SHHDYYIIAT SDGTREGLES LQGGVCLTRG MKVLLRVGQS PRGGAVPRKP 180
  181 VSEMPMERDR GAAHSAEPGR DTIPGDPSSN ATSRGAEGPL PPPSMPAVAG AAGGMALLLL 240
  241 GVAGAGGAMC WRRRRAKPSE SRHPGPGSFG RGGSLGLGGG GGMGPREAEP GELGIALRGG 300
  301 GTADPPFCPH YEKVSGDYGH PVYIVQDGPP QSPPNIYYKV

Type	Start	End	Confidence
Signal Peptide	1	27	0.71
N-region	1	18
H-region	19	24
C-region	25	27
Cleavage Site	27	28
Non-Cytoplasmic	28	226	0.96
Transmembrane Helix	227	251	0.90
Cytoplasmic	252	340	0.87