YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	MOT3_MOUSE
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	15	0.93
Transmembrane Helix	16	35	0.96
Non-Cytoplasmic	36	57	0.87
Transmembrane Helix	58	79	0.88
Cytoplasmic	80	86	0.75
Transmembrane Helix	87	106	0.93
Non-Cytoplasmic	107	112	0.73
Transmembrane Helix	113	137	0.86
Cytoplasmic	138	143	0.90
Transmembrane Helix	144	166	0.89
Non-Cytoplasmic	167	174	0.75
Transmembrane Helix	175	194	0.95
Cytoplasmic	195	227	0.92
Transmembrane Helix	228	250	0.82
Non-Cytoplasmic	251	263	0.75
Transmembrane Helix	264	283	0.87
Cytoplasmic	284	294	0.71
Transmembrane Helix	295	314	0.85
Non-Cytoplasmic	315	320	0.70
Transmembrane Helix	321	341	0.93
Cytoplasmic	342	352	0.68
Transmembrane Helix	353	375	0.84
Non-Cytoplasmic	376	386	0.83
Transmembrane Helix	387	411	0.88
Cytoplasmic	412	492	0.90

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGAGGPRRGA GPPDGGWGWV VLGACFVVTG FAYGFPKAVS VFFRELKRDF GAGYSDTAWV  60
   61 SSIMLAMLYG TGPLSSILVT RFGCRPVMLA GGLLASAGMI LASFASRLVE LYLTAGVLTG 120
  121 LGLALNFQPS LIMLGLYFER RRPLANGLAA AGSPVFLSML SPLGQLLGER FGWRGGFLLF 180
  181 GGLLLHCCAC GAVMRPPPGP PPRRDPSPHG GPARRRRLLD VAVCTDRAFV VYVVTKFLMA 240
  241 LGLFVPAILL VNYAKDAGVP DAEAAFLLSI VGFVDIVARP ACGALAGLGR LRPHVPYLFS 300
  301 LALLANGLTD LISARARSYG TLVAFCIAFG LSYGMVGALQ FEVLMATVGA PRFPSALGLV 360
  361 LLVEAVAVLI GPPSAGRLVD ALKNYEIIFY LAGSEVALAG VFMAVTTYCC LRCSKNISSG 420
  421 RSAEGGASDP EDVEAERDSE PMPASTEEPG SLEALEVLSP RAGSPEQEPE EEAVPELDHE 480
  481 SIGGHEARGQ KA