YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|5631308, gi\|7...
Protein type:	Transmembrane
Type Confidence:	0.95
Topology Confidence:	0.41
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	7	0.41
Transmembrane Helix	8	31	0.77
Non-Cytoplasmic	32	440	0.63
Transmembrane Helix	441	463	0.91
Cytoplasmic	464	481	0.96
Transmembrane Helix	482	502	0.94
Non-Cytoplasmic	503	543	0.49
Transmembrane Helix	544	578	0.73
Cytoplasmic	579	590	0.45
Transmembrane Helix	591	611	0.91
Non-Cytoplasmic	612	616	0.65
Transmembrane Helix	617	639	0.90
Cytoplasmic	640	649	0.64
Transmembrane Helix	650	669	0.89
Non-Cytoplasmic	670	685	0.57
Transmembrane Helix	686	707	0.78
Cytoplasmic	708	786	0.63
Transmembrane Helix	787	807	0.90
Non-Cytoplasmic	808	817	0.65
Transmembrane Helix	818	846	0.69
Cytoplasmic	847	858	0.69
Transmembrane Helix	859	878	0.95
Non-Cytoplasmic	879	891	0.85
Transmembrane Helix	892	915	0.87
Cytoplasmic	916	931	0.90

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLLFFALGLL IHFVFFVSIF DIYFTSPLVH GMTPQFTPLP PPAKRLVLFV ADGLRADTLY  60
   61 ELDEDGNSRA PFIRNVIMHE GSWGVSHTRV PTESRPGHVA LIAGFYEDVS AVAKGWKENP 120
  121 VEFDSLFNES KYTWSWGSPD ILPMFAKGAS GDHVYTYSYD AQREDFGAHD ATKLDTWVFD 180
  181 KVKDFFDAAR NNQSLFTKVN EEKVVFFLHL LGVDTNGHAH RPSSREYKDN IKKVDDGVKE 240
  241 IVSIFKHFYG DDGKTAFIFT SDHGMTDWGS HGAGHPSETL TPFVTWGAGI KFPQNVSAQQ 300
  301 YDDEFLKEWR LENWKRRDVN QADIAPLMAS LIGVPFPLNS VGILPVGYLN NTGLFKAESM 360
  361 FTNAVQILEQ FKVKMTQKKE ATLPFLFTPF KLLSDSQQLD ILRKARSYIK QEKFDEVVSL 420
  421 CEELIDLALR GLSYYHTYDR LFLGINVAVG FVGWMSYTSL LIIKSHSNIP KGTRKEGKKP 480
  481 HCLLLYSFIA TGVLVACFLM IQACPWTYYV YCLLPVPIWY AVLREHEVIQ DLVESLLTFP 540
  541 RSHFVAYLLV FTLGIEVLVL SFFYRYMLTA GLIVFAGWPF LTQLWTRAKI TFLSWAFFSL 600
  601 LLAVFPLMPV VGRKPNLSLV MGAGFLVLLL SLAVVTTLGK RNIKLVKGEL LVLLLQMLST 660
  661 VLSMYVVYST HHSLLKKEGL PLMNQIVSWA TLASSLVAPL LSSTALSQRL ASILLSLMST 720
  721 YLLLSTGYEA LFPLVLSCLM FVWIQVEQET LQQPGVSCKQ KLTSIQFTCD TDIAQFRQLC 780
  781 PDDIRRAFFL VFFLLTAFFG TGNIASINSF DLASVYCFLT VFSPFMMGAL MMWKILIPFV 840
  841 LVMCAFEAVQ ITTQLSSKGL FLVVLIISDI MALHFFFLVK DSGSWLDIGT SISHYVIVMS 900
  901 MTIFLVFLNG LAQLLTTKKL QLCGKPKSHL M