YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|34876835
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.69
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	31	0.99
Transmembrane Helix	32	54	0.94
Non-Cytoplasmic	55	74	0.93
Transmembrane Helix	75	97	0.86
Cytoplasmic	98	114	0.87
Transmembrane Helix	115	135	0.90
Non-Cytoplasmic	136	142	0.80
Transmembrane Helix	143	165	0.93
Cytoplasmic	166	172	0.90
Transmembrane Helix	173	193	0.91
Non-Cytoplasmic	194	241	0.62
Transmembrane Helix	242	263	0.88
Cytoplasmic	264	282	0.54
Transmembrane Helix	283	304	0.80
Non-Cytoplasmic	305	359	0.66
Transmembrane Helix	360	380	0.85
Cytoplasmic	381	414	0.88
Transmembrane Helix	415	434	0.83
Non-Cytoplasmic	435	438	0.54
Transmembrane Helix	439	458	0.79
Cytoplasmic	459	476	0.69

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGIKFLEVIK PFCAVLPEIQ KPERKIQFRE KVLWTAITLF IFLVCCQIPL FGIMSSDSAD  60
   61 PFYWMRVILA SNRGTLMELG ISPIVTSGLI MQLLAGAKII EVGDTPKDRA LFNGAQKLFG 120
  121 MIITIGQAIV YVMTGMYGDP AEMGAGICLL IIIQLFVAGL IVLLLDELLQ KGYGLGSGIS 180
  181 LFIATNICET IVWKAFSPTT INTGRGTEFE GAVIALFHLL ATRTDKVRAL REAFYRQNLP 240
  241 NLMNLIATVF VFAVVIYFQG FRVDLPIKSA RYRGQYSSYP IKLFYTSNIP IILQSALVSN 300
  301 LYVISQMLSV RFSGNFLVNL LGQWADVSGG GPARSYPVGG LCYYLSPPES MGAIFEDPVH 360
  361 VVVYIIFMLG SCAFFSKTWI EVSGSSAKDV AKQLKEQQMV MRGHRDTSMV HELNRYIPTA 420
  421 AAFGGLCIGA LSVLADFLGA IGSGTGILLA VTIIYQYFEI FVKEQAEVGG MGALFF