YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|15488651
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.50
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATWNRPHPR QPVAPEPAAE DDSQQPLGRE LSEANRFAYA ALCGFSLSQL FPEPEQSSFC  60
   61 TEFVTGLVKW LHLSESVLPT MMAFASGLGG EGADIFAQTL LQDPILRDNP SAVSQDLLSF 120
  121 SLKNGHYDAR ARVLVCHVTS LLQVPMEELD ILEEVFLESL KDTKEEESET AEASRKRKEK 180
  181 RRKWKRYLLI GLATVGGGTV IGVTGGLAAP LVAAGAATII GSAGAAALGS VAGIAVMTSL 240
  241 FGAAGAGLTG YKMKKRVGAI EEFMFLPLTE GRQLHITIAI TGWLGSGRYR TFNAPWMALA 300
  301 RSQEQYCLAW EAKYLMELGN ALETILSGLA NMVAQEALKY TVLSGIVAAL TWPASLLSVA 360
  361 NVIDNPWGVC LHRSAEVGKH LAHILLSRQQ GRRPVTLIGF SLGARVIYFC LQEMAQEQDC 420
  421 QGIIEDVVLL GAPVEGDPKH WEPFRNVVSG RIINGYCRGD WLLSFVYRTS SVQLRVAGLQ 480
  481 PVLLQDRRME NVDLTSVVNG HLDYAKQMDA ILKVVGIRTK PGWGEKGLPL APGSLPQEEP 540
  541 LQTAIVSTDE TILQDGQSQG PASEDSLKTT IPSSASQAQM PAGLNQSTED SLSTAAAPAE 600
  601 GHLICSHGVG PNPLGCPDCT HGTQESCTEL D

Type	Start	End	Confidence
Cytoplasmic	1	186	0.97
Transmembrane Helix	187	209	0.95
Non-Cytoplasmic	210	224	0.61
Transmembrane Helix	225	248	0.89
Cytoplasmic	249	339	0.65
Transmembrane Helix	340	360	0.50
Non-Cytoplasmic	361	631	0.65