YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	S22A7_MOUSE
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.75
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	28	0.77
Transmembrane Helix	29	49	0.75
Non-Cytoplasmic	50	143	0.92
Transmembrane Helix	144	163	0.91
Cytoplasmic	164	172	0.85
Transmembrane Helix	173	194	0.91
Non-Cytoplasmic	195	200	0.64
Transmembrane Helix	201	219	0.91
Cytoplasmic	220	228	0.77
Transmembrane Helix	229	251	0.91
Non-Cytoplasmic	252	256	0.79
Transmembrane Helix	257	276	0.95
Cytoplasmic	277	342	0.94
Transmembrane Helix	343	363	0.85
Non-Cytoplasmic	364	375	0.72
Transmembrane Helix	376	395	0.77
Cytoplasmic	396	404	0.64
Transmembrane Helix	405	422	0.92
Non-Cytoplasmic	423	428	0.69
Transmembrane Helix	429	451	0.82
Cytoplasmic	452	462	0.71
Transmembrane Helix	463	484	0.83
Non-Cytoplasmic	485	488	0.61
Transmembrane Helix	489	510	0.79
Cytoplasmic	511	540	0.87

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGFEELLHKV GGFGPFQLRN LVLLALPRFL LPMHFLLPIF MAAVPAHHCA LPDAPANLSH  60
   61 QDLWLKTHLP RETDGSFSSC LRFAYPQALP NVTLGTEVYN SGEPEGEPLT VPCSQGWEYD 120
  121 RSEFSSTIAT EWDLVCEQRG LNKVTSTCFF IGVLLGAVVY GYLSDRFGRR RLLLVAYVST 180
  181 LALGLMSAAS VNYIMFVTTR MLTGSALAGF TIIVLPLELE WLDVEHRTVA GVISTTFWTG 240
  241 GVLLLTLVGY LIRSWRWLLL AATLPCVPGI ISIWWVPESA RWLLTQGRVE EAKKYLSICA 300
  301 KLNGRPISED SLSQEALNKV ITMERVSQRP SYLDLFRTSQ LRHVSLCCMM MWFGVNFSYY 360
  361 GLTLDASGLG LTVYQTQLLF GAVEVPSKIT VFFLVRLVGR RLTEAGMLLA TALTFGISLL 420
  421 VSSDTKSWIT ALVVIGKAFS EAAFTTAYLF TSELYPTVLR QTGMGFTALI GRLGASLAPL 480
  481 VVLLDGVWLL LPKLAYGGIS FLAACTVLLL PETKKAQLPE TIQDVERKGR KIDRSGTELA 540
  541