YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	LPAR1_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.71
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAASTSSPV ISQPQFTAMN EQQCFYNESI AFFYNRSGKY LATEWNTVSK LVMGLGITVC  60
   61 VFIMLANLLV MVAIYVNRRF HFPIYYLMAN LAAADFFAGL AYFYLMFNTG PNTRRLTVST 120
  121 WLLRQGLIDT SLTASVANLL AIAIERHITV FRMQLHTRMS NRRVVVVIVV IWTMAIVMGA 180
  181 IPSVGWNCIC DIDHCSNMAP LYSDSYLVFW AIFNLVTFVV MVVLYAHIFG YVRQRTMRMS 240
  241 RHSSGPRRNR DTMMSLLKTV VIVLGAFIVC WTPGLVLLLL DVCCPQCDVL AYEKFFLLLA 300
  301 EFNSAMNPII YSYRDKEMSA TFRQILCCQR NENPNGPTEG SDRSASSLNH TILAGVHSND 360
  361 HSVV

Type	Start	End	Confidence
Non-Cytoplasmic	1	50	0.88
Transmembrane Helix	51	75	0.89
Cytoplasmic	76	83	0.76
Transmembrane Helix	84	105	0.93
Non-Cytoplasmic	106	125	0.79
Transmembrane Helix	126	144	0.84
Cytoplasmic	145	163	0.87
Transmembrane Helix	164	184	0.93
Non-Cytoplasmic	185	206	0.92
Transmembrane Helix	207	231	0.92
Cytoplasmic	232	253	0.95
Transmembrane Helix	254	276	0.88
Non-Cytoplasmic	277	364	0.71